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Aliases for LOC105372233 Gene

Subcategory (RNA class) for LOC105372233 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372233 Gene

  • Uncharacterized LOC105372233 3
  • AC009005.1 5

External Ids for LOC105372233 Gene

Previous GeneCards Identifiers for LOC105372233 Gene

  • GC19U901905

Summaries for LOC105372233 Gene

GeneCards Summary for LOC105372233 Gene

LOC105372233 (Uncharacterized LOC105372233) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372233 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372233 Gene

Genomics for LOC105372233 Gene

GeneHancer (GH) Regulatory Elements for LOC105372233 Gene

Promoters and enhancers for LOC105372233 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J000569 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 679.9 -1.1 -1096 7.4 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 LOC105372233 BSG GC19P000572 GC19P000573 TMEM259 GRIN3B DAZAP1 PTBP1 ENSG00000267317 CIRBP
GH19J000566 Enhancer 1.1 Ensembl ENCODE 25.9 +5.0 5027 2.4 PKNOX1 ARID4B TCF12 CBX5 GATA2 ATF7 SP5 NCOA1 REST NFIL3 LOC105372233 POLRMT FGF22 BSG PIR53036
GH19J000585 Enhancer 1.1 ENCODE dbSUPER 21.6 -12.1 -12088 0.2 ARID4B ZNF2 ZNF48 POLR2B E2F8 ZNF143 DEK ZHX2 MXD4 MIER2 GC19P000583 GC19M000583 LOC105372233 HCN2
GH19J000583 Enhancer 0.7 ENCODE dbSUPER 22.4 -11.8 -11828 0.2 CTCF POLR2B KLF1 POLR2A MYNN ZBTB8A SUPT5H GC19P000583 GC19M000583 LOC105372233 HCN2
GH19J000530 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 +39.8 39784 4.1 ARID4B SIN3A DMAP1 ZNF766 ZNF213 ZNF207 ZNF143 SP3 MXD4 REST CDC34 GZMM LOC105372233 MIER2 TMEM259 ARID3A R3HDM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372233 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372233 Gene

Genomic Locations for LOC105372233 Gene
chr19:567,210-572,228
(GRCh38/hg38)
Size:
5,019 bases
Orientation:
Minus strand
chr19:567,212-572,215
(GRCh37/hg19)
Size:
5,004 bases
Orientation:
Minus strand

Genomic View for LOC105372233 Gene

Genes around LOC105372233 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372233 Gene

Proteins for LOC105372233 Gene

Post-translational modifications for LOC105372233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372233 Gene

Domains & Families for LOC105372233 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372233 Gene

Function for LOC105372233 Gene

Phenotypes From GWAS Catalog for LOC105372233 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372233 Gene

Localization for LOC105372233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372233 Gene

Pathways & Interactions for LOC105372233 Gene

SuperPathways for LOC105372233 Gene

No Data Available

Interacting Proteins for LOC105372233 Gene

Gene Ontology (GO) - Biological Process for LOC105372233 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372233 Gene

Drugs & Compounds for LOC105372233 Gene

No Compound Related Data Available

Transcripts for LOC105372233 Gene

mRNA/cDNA for LOC105372233 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372233 Gene

No ASD Table

Relevant External Links for LOC105372233 Gene

GeneLoc Exon Structure for
LOC105372233

Expression for LOC105372233 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372233 Gene

Orthologs for LOC105372233 Gene

Evolution for LOC105372233 Gene

ENSEMBL:
Gene Tree for LOC105372233 (if available)
TreeFam:
Gene Tree for LOC105372233 (if available)

No data available for Orthologs for LOC105372233 Gene

Paralogs for LOC105372233 Gene

No data available for Paralogs for LOC105372233 Gene

Variants for LOC105372233 Gene

Sequence variations from dbSNP and Humsavar for LOC105372233 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000473547 -- 571,748(-) A/G intron_variant, non_coding_transcript_variant
rs1000865869 -- 570,360(-) C/G intron_variant
rs1000901107 -- 570,443(-) G/A/C intron_variant
rs1001270363 -- 573,271(-) G/A upstream_transcript_variant
rs1001355054 -- 570,258(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372233 Gene

Disorders for LOC105372233 Gene

No disorders were found for LOC105372233 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372233 Gene

Publications for LOC105372233 Gene

No publications were found for LOC105372233 Gene.

Products for LOC105372233 Gene

Sources for LOC105372233 Gene

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