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Aliases for LOC105372180 Gene

Subcategory (RNA class) for LOC105372180 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105372180 Gene

  • Uncharacterized LOC105372180 3

External Ids for LOC105372180 Gene

Previous GeneCards Identifiers for LOC105372180 Gene

  • GC18U900971

Summaries for LOC105372180 Gene

GeneCards Summary for LOC105372180 Gene

LOC105372180 (Uncharacterized LOC105372180) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372180 Gene

Genomics for LOC105372180 Gene

GeneHancer (GH) Regulatory Elements for LOC105372180 Gene

Promoters and enhancers for LOC105372180 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I070204 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.2 -214 2.4 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 RTTN LOC105372180 SOCS6 GC18P070003
GH18I070206 Enhancer 0.2 ENCODE 550.8 +1.1 1066 0.2 LOC105372180 RTTN SOCS6
GH18I070193 Enhancer 0.8 ENCODE 0.4 -11.1 -11099 2.8 PKNOX1 BMI1 BATF IRF4 RAD21 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 SOCS6 RTTN LOC105372180 GC18P070003
GH18I070179 Enhancer 0.7 ENCODE 0.3 -24.1 -24094 3.9 PKNOX1 JUN SIN3A THRB RARA FOSL1 FOSL2 FOS RUNX3 TCF7L2 RTTN LOC105372180 GC18P070003
GH18I070151 Enhancer 0.7 ENCODE 0.2 -53.9 -53894 0.8 MEIS2 PKNOX1 TEAD4 TAL1 CC2D1A TCF12 NCOR1 CBFA2T2 TRIM24 SMARCE1 LOC105372180 RTTN GC18P070003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372180 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372180 Gene

Genomic Locations for LOC105372180 Gene
chr18:70,205,814-70,209,778
(GRCh38/hg38)
Size:
3,965 bases
Orientation:
Plus strand

Genomic View for LOC105372180 Gene

Genes around LOC105372180 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372180 Gene

Proteins for LOC105372180 Gene

Post-translational modifications for LOC105372180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372180 Gene

Domains & Families for LOC105372180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372180 Gene

Function for LOC105372180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372180 Gene

Localization for LOC105372180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372180 Gene

Pathways & Interactions for LOC105372180 Gene

SuperPathways for LOC105372180 Gene

No Data Available

Interacting Proteins for LOC105372180 Gene

Gene Ontology (GO) - Biological Process for LOC105372180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372180 Gene

Drugs & Compounds for LOC105372180 Gene

No Compound Related Data Available

Transcripts for LOC105372180 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372180 Gene

No ASD Table

Relevant External Links for LOC105372180 Gene

GeneLoc Exon Structure for
LOC105372180

No data available for mRNA/cDNA for LOC105372180 Gene

Expression for LOC105372180 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372180 Gene

Orthologs for LOC105372180 Gene

No data available for Orthologs and Evolution for LOC105372180 Gene

Paralogs for LOC105372180 Gene

No data available for Paralogs for LOC105372180 Gene

Variants for LOC105372180 Gene

Sequence variations from dbSNP and Humsavar for LOC105372180 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs201884120 pathogenic, not-provided, uncertain-significance, MICROCEPHALY, SHORT STATURE, AND POLYMICROGYRIA WITH SEIZURES, not provided, not specified 70,205,267(+) C/T upstream_transcript_variant
rs3911730 conflicting-interpretations-of-pathogenicity, likely-benign, not specified 70,204,107(+) A/C/T upstream_transcript_variant
rs114765225 conflicting-interpretations-of-pathogenicity, not specified 70,204,256(+) G/A upstream_transcript_variant
rs75577820 conflicting-interpretations-of-pathogenicity, not specified 70,205,318(+) G/A upstream_transcript_variant
rs34922729 likely-benign, not specified 70,205,164(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372180 Gene

Disorders for LOC105372180 Gene

No disorders were found for LOC105372180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372180 Gene

Publications for LOC105372180 Gene

No publications were found for LOC105372180 Gene.

Products for LOC105372180 Gene

Sources for LOC105372180 Gene

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