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Aliases for LOC105372165 Gene

Subcategory (RNA class) for LOC105372165 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372165 Gene

  • Uncharacterized LOC105372165 3
  • AC009802.1 5

External Ids for LOC105372165 Gene

Previous GeneCards Identifiers for LOC105372165 Gene

  • GC18U900873

Summaries for LOC105372165 Gene

GeneCards Summary for LOC105372165 Gene

LOC105372165 (Uncharacterized LOC105372165) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372165 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372165 Gene

Genomics for LOC105372165 Gene

GeneHancer (GH) Regulatory Elements for LOC105372165 Gene

Promoters and enhancers for LOC105372165 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I063968 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.5 -494 3.4 HDGF PKNOX1 ATF1 SIN3A DMAP1 ZNF48 YY1 ETS1 GLIS2 ELK1 SERPINB8 LOC105372165 SERPINB10 HMSD RPL12P39
GH18I063979 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -9.5 -9534 0.6 ELF3 CTCF ZNF654 TEAD1 ZFP37 TRIM22 ELF1 RAD21 TEAD3 SMC3 SERPINB8 SERPINB10 HMSD LOC105372165 RPL12P39
GH18I063974 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -5.3 -5320 1.4 CTCF FOXA2 MAX RAD21 YY1 HNF4G ZNF143 SMC3 RXRA REST SERPINB10 SERPINB8 LOC105372165 HMSD RPL12P39
GH18I063990 Enhancer 0.6 dbSUPER 0.3 -23.1 -23103 5.3 CTCF STAT1 ZNF654 TRIM22 CEBPB RAD21 ATF3 SMC3 ZNF143 SERPINB8 SERPINB10 LOC105372165 RPL12P39
GH18I063980 Enhancer 0.4 ENCODE dbSUPER 0.4 -10.0 -10006 0.2 SERPINB10 SERPINB8 LOC105372165 HMSD RPL12P39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372165 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372165 Gene

Genomic Locations for LOC105372165 Gene
chr18:63,966,381-63,970,181
(GRCh38/hg38)
Size:
3,801 bases
Orientation:
Minus strand

Genomic View for LOC105372165 Gene

Genes around LOC105372165 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372165 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372165 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372165 Gene

Proteins for LOC105372165 Gene

Post-translational modifications for LOC105372165 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372165 Gene

Domains & Families for LOC105372165 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372165 Gene

Function for LOC105372165 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372165 Gene

Localization for LOC105372165 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372165 Gene

Pathways & Interactions for LOC105372165 Gene

SuperPathways for LOC105372165 Gene

No Data Available

Interacting Proteins for LOC105372165 Gene

Gene Ontology (GO) - Biological Process for LOC105372165 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372165 Gene

Drugs & Compounds for LOC105372165 Gene

No Compound Related Data Available

Transcripts for LOC105372165 Gene

mRNA/cDNA for LOC105372165 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372165 Gene

No ASD Table

Relevant External Links for LOC105372165 Gene

GeneLoc Exon Structure for
LOC105372165

Expression for LOC105372165 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372165 Gene

Orthologs for LOC105372165 Gene

Evolution for LOC105372165 Gene

ENSEMBL:
Gene Tree for LOC105372165 (if available)
TreeFam:
Gene Tree for LOC105372165 (if available)

No data available for Orthologs for LOC105372165 Gene

Paralogs for LOC105372165 Gene

No data available for Paralogs for LOC105372165 Gene

Variants for LOC105372165 Gene

Sequence variations from dbSNP and Humsavar for LOC105372165 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000236114 -- 63,966,413(-) G/A non_coding_transcript_variant
rs1000642595 -- 63,971,848(-) C/A non_coding_transcript_variant
rs1001147763 -- 63,971,117(-) A/G non_coding_transcript_variant
rs1002023694 -- 63,966,058(-) C/T downstream_transcript_variant
rs1002033478 -- 63,972,236(-) C/A non_coding_transcript_variant

Variation tolerance for LOC105372165 Gene

Gene Damage Index Score: 0.05; 1.06% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC105372165 Gene

Disorders for LOC105372165 Gene

No disorders were found for LOC105372165 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372165 Gene

Publications for LOC105372165 Gene

No publications were found for LOC105372165 Gene.

Products for LOC105372165 Gene

Sources for LOC105372165 Gene

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