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LOC105372160 Gene(RNA Gene)

Uncharacterized LOC105372160

GCID:
GC18M062756
GIFtS:
4
Genes Participants
UDN Logo

Aliases for LOC105372160 Gene

Subcategory (RNA class) for LOC105372160 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372160 Gene

  • Uncharacterized LOC105372160 3

External Ids for LOC105372160 Gene

Previous GeneCards Identifiers for LOC105372160 Gene

  • GC18U900974

Summaries for LOC105372160 Gene

GeneCards Summary for LOC105372160 Gene

LOC105372160 (Uncharacterized LOC105372160) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372160 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372160 Gene

Genomics for LOC105372160 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC105372160 Gene

Promoters and enhancers for LOC105372160 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J062772 Enhancer 0.9 ENCODE dbSUPER 650.7 +1.0 960 0.8 ELF3 SOX5 SOX13 GATAD2A FOXA2 SAP130 TEAD1 FOXA3 HMG20A ZNF384 LOC105372160 PHLPP1 RNU6-142P GC18M062732
GH18J062780 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.8 -7847 2.1 FOXA2 ZBTB6 MAX CEBPG RAD21 YY1 SCRT2 HNF4G FOSL2 FOS PHLPP1 RNU6-142P LOC105372160 PIR33415
GH18J062787 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -14.4 -14376 1.6 FEZF1 ZIC2 BCL11B ZNF335 ZNF664 POLR2A ZSCAN5C PRDM10 ZNF600 TCF7L2 PHLPP1 RNU6-142P LOC105372160 PIR33415
GH18J062784 Enhancer 1.1 ENCODE dbSUPER 0.4 -11.0 -10968 1.2 ATF1 INSM2 KLF17 FEZF1 BATF ZNF2 ZEB1 ZNF366 ZSCAN5C IKZF2 ENSG00000267560 PHLPP1 RNU6-142P LOC105372160 PIR33415
GH18J062766 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +6.2 6219 3.2 SOX13 GATAD2A SRF JUN HLF CEBPB CEBPG ZIC2 PRDM6 JUND PHLPP1 RNU6-142P LOC105372160 GC18M062732
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372160 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372160 Gene

Genomic Locations for LOC105372160 Gene
chr18:62,756,307-62,774,027
(GRCh38/hg38)
Size:
17,721 bases
Orientation:
Minus strand

Genomic View for LOC105372160 Gene

Genes around LOC105372160 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372160 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372160 Gene

Proteins for LOC105372160 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105372160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372160 Gene

Domains & Families for LOC105372160 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372160 Gene

Function for LOC105372160 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372160 Gene

Localization for LOC105372160 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372160 Gene

Pathways & Interactions for LOC105372160 Gene

SuperPathways for LOC105372160 Gene

PathCards logo More details on SuperPathways for LOC105372160
No Data Available

Interacting Proteins for LOC105372160 Gene

Gene Ontology (GO) - Biological Process for LOC105372160 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372160 Gene

Drugs & Compounds for LOC105372160 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105372160 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372160 Gene

No ASD Table

Relevant External Links for LOC105372160 Gene

GeneLoc Exon Structure for
LOC105372160

No data available for mRNA/cDNA for LOC105372160 Gene

Expression for LOC105372160 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372160 Gene

Orthologs for LOC105372160 Gene

No data available for Orthologs and Evolution for LOC105372160 Gene

Paralogs for LOC105372160 Gene

No data available for Paralogs for LOC105372160 Gene

Variants for LOC105372160 Gene

Sequence variations from dbSNP and Humsavar for LOC105372160 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000106360 -- 62,766,462(-) C/T intron_variant
rs1000161587 -- 62,761,149(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000240567 -- 62,758,191(-) A/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000311155 -- 62,758,538(-) A/G genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000364348 -- 62,772,675(-) A/G genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372160 Gene

Disorders for LOC105372160 Gene

No disorders were found for LOC105372160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372160 Gene

Publications for LOC105372160 Gene

No publications were found for LOC105372160 Gene.

Products for LOC105372160 Gene

Sources for LOC105372160 Gene

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