Aliases for LOC105372146 Gene

Subcategory (RNA class) for LOC105372146 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372146 Gene

  • Uncharacterized LOC105372146 3

External Ids for LOC105372146 Gene

Previous GeneCards Identifiers for LOC105372146 Gene

  • GC18U900990

Summaries for LOC105372146 Gene

GeneCards Summary for LOC105372146 Gene

LOC105372146 (Uncharacterized LOC105372146) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105372146 include Immunodeficiency 12.

Additional gene information for LOC105372146 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372146 Gene

Genomics for LOC105372146 Gene

GeneHancer (GH) Regulatory Elements for LOC105372146 Gene

Promoters and enhancers for LOC105372146 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J058781 Enhancer 1.2 Ensembl ENCODE dbSUPER 750.6 -1.7 -1700 1.1 CTCF LCORL CTBP1 ZNF133 CC2D1A MAX RAD21 SOX6 ZNF280D IKZF1 LOC105372146 piR-48759-146 MALT1 ZNF532 ENSG00000199713 lnc-MALT1-4
GH18J058779 Enhancer 0.4 Ensembl 750.6 +0.5 533 1.4 ZNF18 ZBTB33 SP1 LOC105372146 piR-48759-146 ENSG00000199713 MALT1 ENSG00000267501
GH18J058782 Enhancer 0.2 Ensembl 750.6 -0.9 -867 0.2 LOC105372146 piR-48759-146 ENSG00000199713 lnc-MALT1-4
GH18J058768 Enhancer 1 ENCODE CraniofacialAtlas 0.4 +11.9 11850 0.8 ZNF785 CTCF RBPJ RAD21 TFE3 SP7 GLIS2 ZBTB8A TRIM22 GATAD2A SNORA108 ENSG00000199713 LOC105372146 ENSG00000267501
GH18J058667 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.1 +109.8 109754 6.2 SIN3A ZNF24 SP1 CTCF POLR2A ETV6 HLF NKRF ELF3 AHR MALT1 LOC101927322 SNORA108 ENSG00000275418 LOC102724745 ENSG00000267476 LOC105372146
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372146 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372146 Gene

Genomic Locations for LOC105372146 Gene
chr18:58,671,923-58,780,234
(GRCh38/hg38)
Size:
108,312 bases
Orientation:
Minus strand

Genomic View for LOC105372146 Gene

Genes around LOC105372146 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372146 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372146 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372146 Gene

Proteins for LOC105372146 Gene

Post-translational modifications for LOC105372146 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372146 Gene

Domains & Families for LOC105372146 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372146 Gene

Function for LOC105372146 Gene

Phenotypes From GWAS Catalog for LOC105372146 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372146 Gene

Localization for LOC105372146 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372146 Gene

Pathways & Interactions for LOC105372146 Gene

PathCards logo

SuperPathways for LOC105372146 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372146 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372146 Gene

Drugs & Compounds for LOC105372146 Gene

No Compound Related Data Available

Transcripts for LOC105372146 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372146 Gene

No ASD Table

Relevant External Links for LOC105372146 Gene

GeneLoc Exon Structure for
LOC105372146

No data available for mRNA/cDNA for LOC105372146 Gene

Expression for LOC105372146 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372146 Gene

Orthologs for LOC105372146 Gene

No data available for Orthologs and Evolution for LOC105372146 Gene

Paralogs for LOC105372146 Gene

No data available for Paralogs for LOC105372146 Gene

Variants for LOC105372146 Gene

Sequence variations from dbSNP and Humsavar for LOC105372146 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1229588896 uncertain-significance, Immunodeficiency 12 58,681,213(-) G/A intron_variant
rs398123058 pathogenic, Immunodeficiency 12 58,681,226(-) G/T intron_variant
rs768986231 likely-benign, Immunodeficiency 12 58,681,163(-) C/T intron_variant
rs1000033680 -- 58,674,499(-) G/C/T genic_downstream_transcript_variant, intron_variant
rs1000093679 -- 58,676,704(-) A/G intron_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372146 Gene

Disorders for LOC105372146 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105372146 Gene - From: GeneCards

Disorder Aliases PubMed IDs
immunodeficiency 12
  • imd12
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105372146: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372146 Gene

Publications for LOC105372146 Gene

No publications were found for LOC105372146 Gene.

No data available for External Links for LOC105372146 Gene

Products for LOC105372146 Gene

Sources for LOC105372146 Gene