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Aliases for LOC105372143 Gene

Subcategory (RNA class) for LOC105372143 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372143 Gene

  • Uncharacterized LOC105372143 3
  • AC107896.1 5

External Ids for LOC105372143 Gene

Previous GeneCards Identifiers for LOC105372143 Gene

  • GC18U901114

Summaries for LOC105372143 Gene

GeneCards Summary for LOC105372143 Gene

LOC105372143 (Uncharacterized LOC105372143) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372143 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372143 Gene

Genomics for LOC105372143 Gene

GeneHancer (GH) Regulatory Elements for LOC105372143 Gene

Promoters and enhancers for LOC105372143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J058193 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.4 -411 4.7 CTCF MXI1 USF1 JUN RAD21 ETS1 POLR2A ZBTB48 SRF ZNF654 NEDD4L LOC105372143 HMGN1P30 ENSG00000267504
GH18J058143 Enhancer 0.9 ENCODE 14.8 +52.2 52182 0.7 PKNOX1 ARNT FEZF1 ZNF2 ZNF213 KLF7 TSHZ1 ZNF488 ZNF518A ZNF610 MALT1 LOC105372143 LOC105372145 ENSG00000267789 ENSG00000267215 ZNF532 HMGN1P30 LOC100505549 NEDD4L
GH18J058230 Enhancer 1.3 Ensembl ENCODE dbSUPER 7.5 -38.4 -38394 8.2 PKNOX1 FOXA2 YY1 ZNF121 GLIS2 FOS RXRA JUNB TSHZ1 REST NEDD4L MIR122 MIR3591 LOC105372143 ENSG00000267504
GH18J058241 Enhancer 1.2 Ensembl ENCODE dbSUPER 5 -47.3 -47255 3.4 INSM2 FEZF1 ZEB1 ZNF366 ZSCAN5C TSHZ1 ZEB2 ZNF843 GLIS1 BCL6B LOC105372143 ENSG00000267504 NEDD4L
GH18J058227 Enhancer 0.6 ENCODE dbSUPER 6.7 -33.0 -33039 1.6 USF1 POLR2A ZKSCAN1 NEDD4L LOC105372143 ENSG00000267504
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372143 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372143 Gene

Genomic Locations for LOC105372143 Gene
chr18:58,188,247-58,195,710
(GRCh38/hg38)
Size:
7,464 bases
Orientation:
Minus strand
chr18:55,857,066-55,862,928
(GRCh37/hg19)
Size:
5,863 bases
Orientation:
Minus strand

Genomic View for LOC105372143 Gene

Genes around LOC105372143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372143 Gene

Proteins for LOC105372143 Gene

Post-translational modifications for LOC105372143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372143 Gene

Domains & Families for LOC105372143 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372143 Gene

Function for LOC105372143 Gene

Phenotypes From GWAS Catalog for LOC105372143 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372143 Gene

Localization for LOC105372143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372143 Gene

Pathways & Interactions for LOC105372143 Gene

SuperPathways for LOC105372143 Gene

No Data Available

Interacting Proteins for LOC105372143 Gene

Gene Ontology (GO) - Biological Process for LOC105372143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372143 Gene

Drugs & Compounds for LOC105372143 Gene

No Compound Related Data Available

Transcripts for LOC105372143 Gene

mRNA/cDNA for LOC105372143 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372143 Gene

No ASD Table

Relevant External Links for LOC105372143 Gene

GeneLoc Exon Structure for
LOC105372143

Expression for LOC105372143 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372143 Gene

Orthologs for LOC105372143 Gene

Evolution for LOC105372143 Gene

ENSEMBL:
Gene Tree for LOC105372143 (if available)
TreeFam:
Gene Tree for LOC105372143 (if available)

No data available for Orthologs for LOC105372143 Gene

Paralogs for LOC105372143 Gene

No data available for Paralogs for LOC105372143 Gene

Variants for LOC105372143 Gene

Sequence variations from dbSNP and Humsavar for LOC105372143 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000519122 -- 58,190,918(-) G/A downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000638161 -- 58,196,747(-) C/T upstream_transcript_variant
rs1001235156 -- 58,196,409(-) C/A upstream_transcript_variant
rs1001244082 -- 58,190,460(-) A/T genic_downstream_transcript_variant, intron_variant
rs1001450509 -- 58,196,620(-) AAAAAA/AAAAAAA upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372143 Gene

Disorders for LOC105372143 Gene

No disorders were found for LOC105372143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372143 Gene

Publications for LOC105372143 Gene

No publications were found for LOC105372143 Gene.

Products for LOC105372143 Gene

Sources for LOC105372143 Gene

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