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Aliases for LOC105372141 Gene
Subcategory (RNA class) for LOC105372141 Gene
ncRNA
Quality Score for this RNA gene is
13
Aliases for LOC105372141 Gene
- Uncharacterized LOC105372141 3
External Ids for LOC105372141 Gene
- Entrez Gene: 105372141
Previous GeneCards Identifiers for LOC105372141 Gene
- GC18U900902
Summaries for LOC105372141 Gene
GeneCards Summary for LOC105372141 Gene
LOC105372141 (Uncharacterized LOC105372141) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105372141 include Familial Intrahepatic Cholestasis.
Additional gene information for LOC105372141 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372141 Gene
Genomics for LOC105372141 Gene
GeneHancer (GH) Regulatory Elements for LOC105372141 Gene
Promoters and enhancers for LOC105372141 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J057732 | Enhancer | 0.3 | dbSUPER | 750.6 | +1.3 | 1261 | 0.7 | NCOA3 FOXA1 | LOC105372141 RNU6-742P HMGN1P30 piR-49400-036 ATP8B1 ENSG00000267787 | |
| GH18J057731 | Enhancer | 0.2 | Ensembl | 750.6 | -0.3 | -338 | 1 | LOC105372141 RNU6-742P HMGN1P30 piR-61532-128 ATP8B1 ENSG00000267787 | ||
| GH18J057727 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.6 | -2.8 | -2839 | 3.6 | NCOA3 DPF2 NR2F2 GATA3 ELF1 JUN FOS JUND | RNU6-742P HMGN1P30 LOC105372141 piR-61532-128 ATP8B1 ENSG00000267787 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105372141 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC105372141 Gene
Genomic Locations for LOC105372141 Gene
- chr18:57,731,839-57,735,388
- (GRCh38/hg38)
- Size:
- 3,550 bases
- Orientation:
- Plus strand
Genomic View for LOC105372141 Gene
Genes around LOC105372141 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 18q21.31 by Entrez Gene
LOC105372141 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105372141 Gene
Proteins for LOC105372141 Gene
Post-translational modifications for LOC105372141 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105372141
- Origene Custom Protein Services for LOC105372141
No data available for DME Specific Peptides for LOC105372141 Gene
Domains & Families for LOC105372141 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372141 Gene
Function for LOC105372141 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372141 Gene
Localization for LOC105372141 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372141 Gene
Transcripts for LOC105372141 Gene
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105372141 Gene
- GeneLoc Exon Structure for
- LOC105372141
No data available for mRNA/cDNA for LOC105372141 Gene
Expression for LOC105372141 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372141 Gene
Orthologs for LOC105372141 Gene
No data available for Orthologs and Evolution for LOC105372141 Gene
Paralogs for LOC105372141 Gene
No data available for Paralogs for LOC105372141 Gene
Variants for LOC105372141 Gene
| SNP ID | Clin | Chr 18 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs137973298 | likely-benign, uncertain-significance, not specified, Familial Intrahepatic Cholestasis, not provided | 57,731,658(+) | T/C | upstream_transcript_variant | |
| rs141463153 | likely-benign, uncertain-significance, not specified, not provided | 57,731,694(+) | A/C | upstream_transcript_variant | |
| rs35671095 | uncertain-significance, likely-benign, Familial Intrahepatic Cholestasis, not specified | 57,731,838(+) | A/C/G | non_coding_transcript_variant | |
| rs146599962 | conflicting-interpretations-of-pathogenicity, not specified | 57,731,674(+) | T/G | upstream_transcript_variant | |
| rs369562908 | likely-benign, not specified | 57,731,608(+) | C/T | upstream_transcript_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372141 Gene
Disorders for LOC105372141 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| familial intrahepatic cholestasis |
|
|
Search LOC105372141 in MalaCards
View complete list of genes associated with diseases
No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372141 Gene
Publications for LOC105372141 Gene
No publications were found for LOC105372141 Gene.
No data available for External Links for LOC105372141 Gene
Products for LOC105372141 Gene
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- Browse CRISPR knockouts for LOC105372141
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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Sources for LOC105372141 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
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- (15) ProtoNet
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- (28) ASD
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- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
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- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
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- (58) TGDB
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- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
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- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
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- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
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- (147) Applied Biosystems
- (148) GlyConnect
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- (165) Bio Basic
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