Aliases for LOC105372141 Gene

Subcategory (RNA class) for LOC105372141 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372141 Gene

  • Uncharacterized LOC105372141 3

External Ids for LOC105372141 Gene

Previous GeneCards Identifiers for LOC105372141 Gene

  • GC18U900902

Summaries for LOC105372141 Gene

GeneCards Summary for LOC105372141 Gene

LOC105372141 (Uncharacterized LOC105372141) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105372141 include Familial Intrahepatic Cholestasis.

Additional gene information for LOC105372141 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372141 Gene

Genomics for LOC105372141 Gene

GeneHancer (GH) Regulatory Elements for LOC105372141 Gene

Promoters and enhancers for LOC105372141 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J057732 Enhancer 0.3 dbSUPER 750.6 +1.3 1261 0.7 NCOA3 FOXA1 LOC105372141 RNU6-742P HMGN1P30 piR-49400-036 ATP8B1 ENSG00000267787
GH18J057731 Enhancer 0.2 Ensembl 750.6 -0.3 -338 1 LOC105372141 RNU6-742P HMGN1P30 piR-61532-128 ATP8B1 ENSG00000267787
GH18J057727 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.6 -2.8 -2839 3.6 NCOA3 DPF2 NR2F2 GATA3 ELF1 JUN FOS JUND RNU6-742P HMGN1P30 LOC105372141 piR-61532-128 ATP8B1 ENSG00000267787
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372141 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372141 Gene

Genomic Locations for LOC105372141 Gene
chr18:57,731,839-57,735,388
(GRCh38/hg38)
Size:
3,550 bases
Orientation:
Plus strand

Genomic View for LOC105372141 Gene

Genes around LOC105372141 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372141 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372141 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372141 Gene

Proteins for LOC105372141 Gene

Post-translational modifications for LOC105372141 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372141 Gene

Domains & Families for LOC105372141 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372141 Gene

Function for LOC105372141 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372141 Gene

Localization for LOC105372141 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372141 Gene

Pathways & Interactions for LOC105372141 Gene

PathCards logo

SuperPathways for LOC105372141 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372141 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372141 Gene

Drugs & Compounds for LOC105372141 Gene

No Compound Related Data Available

Transcripts for LOC105372141 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372141 Gene

No ASD Table

Relevant External Links for LOC105372141 Gene

GeneLoc Exon Structure for
LOC105372141

No data available for mRNA/cDNA for LOC105372141 Gene

Expression for LOC105372141 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372141 Gene

Orthologs for LOC105372141 Gene

No data available for Orthologs and Evolution for LOC105372141 Gene

Paralogs for LOC105372141 Gene

No data available for Paralogs for LOC105372141 Gene

Variants for LOC105372141 Gene

Sequence variations from dbSNP and Humsavar for LOC105372141 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs137973298 likely-benign, uncertain-significance, not specified, Familial Intrahepatic Cholestasis, not provided 57,731,658(+) T/C upstream_transcript_variant
rs141463153 likely-benign, uncertain-significance, not specified, not provided 57,731,694(+) A/C upstream_transcript_variant
rs35671095 uncertain-significance, likely-benign, Familial Intrahepatic Cholestasis, not specified 57,731,838(+) A/C/G non_coding_transcript_variant
rs146599962 conflicting-interpretations-of-pathogenicity, not specified 57,731,674(+) T/G upstream_transcript_variant
rs369562908 likely-benign, not specified 57,731,608(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372141 Gene

Disorders for LOC105372141 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105372141 Gene - From: GeneCards

Disorder Aliases PubMed IDs
familial intrahepatic cholestasis
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105372141: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372141 Gene

Publications for LOC105372141 Gene

No publications were found for LOC105372141 Gene.

No data available for External Links for LOC105372141 Gene

Products for LOC105372141 Gene

Sources for LOC105372141 Gene