LOC105372135 Gene (RNA Gene)

Uncharacterized LOC105372135

GC18P056573
GIFtS:
2

Aliases for LOC105372135 Gene

Subcategory (RNA class) for LOC105372135 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372135 Gene

  • Uncharacterized LOC105372135 3

External Ids for LOC105372135 Gene

Previous GeneCards Identifiers for LOC105372135 Gene

  • GC18U901041

Summaries for LOC105372135 Gene

GeneCards Summary for LOC105372135 Gene

LOC105372135 (Uncharacterized LOC105372135) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372135 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372135 Gene

Genomics for LOC105372135 Gene

GeneHancer (GH) Regulatory Elements for LOC105372135 Gene

Promoters and enhancers for LOC105372135 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056574 Enhancer 0.8 Ensembl ENCODE 0.6 +2.2 2195 3 CTCF RAD21 SP1 RXRA REST TRIM22 SMC3 YY1 NR2F2 MAX LOC105372135 HSALNG0121726 HSALNG0121730
GH18J056579 Enhancer 0.2 Ensembl 0.4 +6.6 6583 1.8 TXNL1 TCF4 HSALNG0121726 LOC105372135 HSALNG0121730
GH18J056597 Enhancer 0.2 Ensembl 0.3 +24.9 24883 1.6 HSALNG0121730 TXNL1 lnc-TCF4-2 LOC105372135
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372135 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372135 Gene

Genomic Locations for LOC105372135 Gene
chr18:56,573,518-56,575,165
(GRCh38/hg38)
Size:
1,648 bases
Orientation:
Plus strand

Genomic View for LOC105372135 Gene

Genes around LOC105372135 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372135 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372135 Gene

Proteins for LOC105372135 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105372135 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372135 Gene

Domains & Families for LOC105372135 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372135 Gene

Function for LOC105372135 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372135 Gene

Localization for LOC105372135 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372135 Gene

Pathways & Interactions for LOC105372135 Gene

PathCards logo

SuperPathways for LOC105372135 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372135 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372135 Gene

Drugs & Compounds for LOC105372135 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105372135 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372135 Gene

No ASD Table

Relevant External Links for LOC105372135 Gene

GeneLoc Exon Structure for
LOC105372135

No data available for mRNA/cDNA for LOC105372135 Gene

Expression for LOC105372135 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372135 Gene

Orthologs for LOC105372135 Gene

No data available for Orthologs and Evolution for LOC105372135 Gene

Paralogs for LOC105372135 Gene

No data available for Paralogs for LOC105372135 Gene

Variants for LOC105372135 Gene

Sequence variations from dbSNP and Humsavar for LOC105372135 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000097269 -- 56,574,179(+) G/T intron_variant
rs1004403812 -- 56,573,958(+) C/T intron_variant
rs1004456177 -- 56,574,252(+) TGTG/TG intron_variant
rs1004742976 -- 56,575,228(+) A/G downstream_transcript_variant
rs1004795320 -- 56,575,582(+) A/G downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372135 Gene

Disorders for LOC105372135 Gene

No disorders were found for LOC105372135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372135 Gene

Publications for LOC105372135 Gene

No publications were found for LOC105372135 Gene.

No data available for External Links for LOC105372135 Gene

Products for LOC105372135 Gene

Sources for LOC105372135 Gene