Aliases for LOC105372130 Gene

Subcategory (RNA class) for LOC105372130 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372130 Gene

  • Uncharacterized LOC105372130 3

External Ids for LOC105372130 Gene

Previous GeneCards Identifiers for LOC105372130 Gene

  • GC18U900865

Summaries for LOC105372130 Gene

GeneCards Summary for LOC105372130 Gene

LOC105372130 (Uncharacterized LOC105372130) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372130 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372130 Gene

Genomics for LOC105372130 Gene

GeneHancer (GH) Regulatory Elements for LOC105372130 Gene

Promoters and enhancers for LOC105372130 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055665 Enhancer 0.2 FANTOM5 750.6 +0.2 234 0.3 LOC105372130 TCF4 piR-33422-194 RPL21P126 HSALNG0121693 ENSG00000267284
GH18J055731 Enhancer 1 Ensembl ENCODE 0.2 +67.0 66957 1.8 SMARCE1 L3MBTL2 TEAD4 ZKSCAN8 ZNF148 GTF2F1 BACH1 CBFA2T2 MLLT1 SMARCA4 TCF4 RPL21P126 piR-45012-253 piR-50437-312 LOC105372130 ENSG00000267284
GH18J055778 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 0.1 +114.9 114851 4 HLF L3MBTL2 RAD21 ZNF148 CTCF IKZF1 GLIS2 ZIC2 ARID2 REST LINC01415 piR-50437-312 LOC105372130 ENSG00000267284
GH18J055747 Enhancer 1.1 Ensembl ENCODE 0.2 +83.1 83063 1.4 SMARCE1 RUNX1 CC2D1A L3MBTL2 DACH1 TEAD4 ZKSCAN8 ZNF148 GTF2F1 BACH1 LINC01415 piR-50437-312 piR-45012-253 LOC105372130 ENSG00000267284
GH18J055735 Enhancer 0.7 ENCODE 0.2 +69.8 69821 0.2 TEAD4 CBFA2T2 SMARCA4 PKNOX1 HDAC1 LEF1 EP300 SOX6 TCF12 CTBP1 TCF4 RPL21P126 piR-45012-253 piR-50437-312 LOC105372130 ENSG00000267284
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372130 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372130 Gene

Genomic Locations for LOC105372130 Gene
chr18:55,665,544-55,839,862
(GRCh38/hg38)
Size:
174,319 bases
Orientation:
Plus strand

Genomic View for LOC105372130 Gene

Genes around LOC105372130 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372130 Gene

Proteins for LOC105372130 Gene

Post-translational modifications for LOC105372130 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372130 Gene

Domains & Families for LOC105372130 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372130 Gene

Function for LOC105372130 Gene

Phenotypes From GWAS Catalog for LOC105372130 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372130 Gene

Localization for LOC105372130 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372130 Gene

Pathways & Interactions for LOC105372130 Gene

PathCards logo

SuperPathways for LOC105372130 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372130 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372130 Gene

Drugs & Compounds for LOC105372130 Gene

No Compound Related Data Available

Transcripts for LOC105372130 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372130 Gene

No ASD Table

Relevant External Links for LOC105372130 Gene

GeneLoc Exon Structure for
LOC105372130

No data available for mRNA/cDNA for LOC105372130 Gene

Expression for LOC105372130 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372130 Gene

Orthologs for LOC105372130 Gene

No data available for Orthologs and Evolution for LOC105372130 Gene

Paralogs for LOC105372130 Gene

No data available for Paralogs for LOC105372130 Gene

Variants for LOC105372130 Gene

Sequence variations from dbSNP and Humsavar for LOC105372130 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000019696 -- 55,759,140(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000024686 -- 55,728,680(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000043876 -- 55,817,772(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000080114 -- 55,665,962(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000097729 -- 55,668,790(+) G/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372130 Gene

Disorders for LOC105372130 Gene

No disorders were found for LOC105372130 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372130 Gene

Publications for LOC105372130 Gene

No publications were found for LOC105372130 Gene.

No data available for External Links for LOC105372130 Gene

Products for LOC105372130 Gene

Sources for LOC105372130 Gene