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Aliases for LOC105372108 Gene

Subcategory (RNA class) for LOC105372108 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372108 Gene

  • Uncharacterized LOC105372108 3
  • AC114684.1 5

External Ids for LOC105372108 Gene

Previous GeneCards Identifiers for LOC105372108 Gene

  • GC18U900883

Summaries for LOC105372108 Gene

GeneCards Summary for LOC105372108 Gene

LOC105372108 (Uncharacterized LOC105372108) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372108 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372108 Gene

Genomics for LOC105372108 Gene

GeneHancer (GH) Regulatory Elements for LOC105372108 Gene

Promoters and enhancers for LOC105372108 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I048962 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +1.2 1198 2.3 PKNOX1 KLF17 TCF12 EGR2 CAVIN1 ZNF398 HDAC8 ZNF592 MEF2D GLIS1 LOC105372108 RPL17 LOC100129878 SMAD7
GH18I048958 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +4.4 4416 2.9 KLF17 MZF1 ZNF2 ETS1 ZEB1 ZNF335 GLIS2 ZNF366 ZSCAN5C FOS ENSG00000265496 LOC105372108 SMAD7
GH18I048973 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.3 -10329 3.7 SIN3A ZNF2 ZNF48 ZNF766 GLIS2 ZNF213 ZNF143 ZNF202 SP3 GLIS1 RPL17 LOC100129878 SMAD7 LOC105372108 ENSG00000280335
GH18I048954 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.6 8649 4 JUN ETV1 ZBTB40 RFX5 ZNF121 POLR2A FOS HLF CEBPB ELF1 SMAD7 LOC105372108
GH18I048982 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 -18.5 -18485 2 ZNF48 SLC30A9 TCF12 ZNF121 ATF7 ZNF491 NFIL3 SMARCA4 ZNF624 KDM1A RPL17 DYM SMAD7 LOC105372108 ENSG00000280335
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372108 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372108 Gene

Genomic Locations for LOC105372108 Gene
chr18:48,962,086-48,964,745
(GRCh38/hg38)
Size:
2,660 bases
Orientation:
Minus strand
chr18:46,489,321-46,490,311
(GRCh37/hg19)

Genomic View for LOC105372108 Gene

Genes around LOC105372108 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372108 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372108 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372108 Gene

Proteins for LOC105372108 Gene

Post-translational modifications for LOC105372108 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372108 Gene

Domains & Families for LOC105372108 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372108 Gene

Function for LOC105372108 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372108 Gene

Localization for LOC105372108 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372108 Gene

Pathways & Interactions for LOC105372108 Gene

SuperPathways for LOC105372108 Gene

No Data Available

Interacting Proteins for LOC105372108 Gene

Gene Ontology (GO) - Biological Process for LOC105372108 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372108 Gene

Drugs & Compounds for LOC105372108 Gene

No Compound Related Data Available

Transcripts for LOC105372108 Gene

mRNA/cDNA for LOC105372108 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372108 Gene

No ASD Table

Relevant External Links for LOC105372108 Gene

GeneLoc Exon Structure for
LOC105372108

Expression for LOC105372108 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372108 Gene

Orthologs for LOC105372108 Gene

Evolution for LOC105372108 Gene

ENSEMBL:
Gene Tree for LOC105372108 (if available)
TreeFam:
Gene Tree for LOC105372108 (if available)

No data available for Orthologs for LOC105372108 Gene

Paralogs for LOC105372108 Gene

No data available for Paralogs for LOC105372108 Gene

Variants for LOC105372108 Gene

Sequence variations from dbSNP and Humsavar for LOC105372108 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000004648 -- 48,966,090(-) AAAAAAAAAAAA/AAAAAAAAAAA upstream_transcript_variant
rs1001303121 -- 48,962,915(-) C/A/T intron_variant
rs1001520377 -- 48,964,187(-) T/C non_coding_transcript_variant
rs1001733135 -- 48,962,664(-) G/T intron_variant
rs1002175095 -- 48,967,085(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372108 Gene

Disorders for LOC105372108 Gene

No disorders were found for LOC105372108 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372108 Gene

Publications for LOC105372108 Gene

No publications were found for LOC105372108 Gene.

Products for LOC105372108 Gene

Sources for LOC105372108 Gene

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