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Aliases for LOC105372107 Gene

Subcategory (RNA class) for LOC105372107 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372107 Gene

  • Uncharacterized LOC105372107 3
  • AC048380.1 5

External Ids for LOC105372107 Gene

Previous GeneCards Identifiers for LOC105372107 Gene

  • GC18U901154

Summaries for LOC105372107 Gene

GeneCards Summary for LOC105372107 Gene

LOC105372107 (Uncharacterized LOC105372107) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372107 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372107 Gene

Genomics for LOC105372107 Gene

GeneHancer (GH) Regulatory Elements for LOC105372107 Gene

Promoters and enhancers for LOC105372107 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J048693 Enhancer 0.9 Ensembl ENCODE 650.7 -1.0 -1011 1.4 LEF1 ZNF644 ZBTB40 FOSL1 ZNF316 ZSCAN29 NFE2 MAFK ZNF639 STAT1 LOC105372107 CTIF ENSG00000279250
GH18J049560 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 14.6 -869.4 -869411 3.6 ATF1 ARID4B SIN3A ZNF2 YY1 ZNF416 FOS SP3 RXRA NFYC LIPG ENSG00000266696 LOC101928144 SRP72P1 ENSG00000263895 ENSG00000267196 ENSG00000265128 ENSG00000267591 RN7SL310P ENSG00000267695
GH18J048872 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -180.7 -180705 2 ZFP64 FEZF1 ZNF213 ZNF548 FOS SP3 ZC3H11A REST ZNF592 ZNF610 RPL17 LOC100129878 ENSG00000266696 LOC105372107 ENSG00000265128 ENSG00000263895 LOC101928144 SRP72P1 SMAD2 CTIF
GH18J048958 Enhancer 1.2 Ensembl ENCODE dbSUPER 14.6 -267.5 -267471 2.9 KLF17 MZF1 ZNF2 YY1 ZEB1 ZNF335 GLIS2 ZNF366 ZSCAN5C FOS ENSG00000266696 ENSG00000265128 LOC105372107 ENSG00000263895 LOC101928144 SRP72P1 ENSG00000265496 LOC105372108 SMAD7
GH18J048673 Enhancer 1.1 Ensembl ENCODE 0.4 +17.6 17557 4.2 HDGF ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 ZNF143 RUNX3 SP3 CTIF DYM MIR4743 LOC105372107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372107 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372107 Gene

Genomic Locations for LOC105372107 Gene
chr18:48,673,575-48,692,858
(GRCh38/hg38)
Size:
19,284 bases
Orientation:
Minus strand
chr18:46,199,946-46,214,790
(GRCh37/hg19)
Size:
14,845 bases
Orientation:
Minus strand

Genomic View for LOC105372107 Gene

Genes around LOC105372107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372107 Gene

Proteins for LOC105372107 Gene

Post-translational modifications for LOC105372107 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372107 Gene

Domains & Families for LOC105372107 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372107 Gene

Function for LOC105372107 Gene

Phenotypes From GWAS Catalog for LOC105372107 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372107 Gene

Localization for LOC105372107 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372107 Gene

Pathways & Interactions for LOC105372107 Gene

SuperPathways for LOC105372107 Gene

No Data Available

Interacting Proteins for LOC105372107 Gene

Gene Ontology (GO) - Biological Process for LOC105372107 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372107 Gene

Drugs & Compounds for LOC105372107 Gene

No Compound Related Data Available

Transcripts for LOC105372107 Gene

mRNA/cDNA for LOC105372107 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372107 Gene

No ASD Table

Relevant External Links for LOC105372107 Gene

GeneLoc Exon Structure for
LOC105372107

Expression for LOC105372107 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372107 Gene

Orthologs for LOC105372107 Gene

Evolution for LOC105372107 Gene

ENSEMBL:
Gene Tree for LOC105372107 (if available)
TreeFam:
Gene Tree for LOC105372107 (if available)

No data available for Orthologs for LOC105372107 Gene

Paralogs for LOC105372107 Gene

No data available for Paralogs for LOC105372107 Gene

Variants for LOC105372107 Gene

Sequence variations from dbSNP and Humsavar for LOC105372107 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000075344 -- 48,688,939(-) T/A non_coding_transcript_variant
rs1000123949 -- 48,681,255(-) G/A intron_variant
rs1000153886 -- 48,673,089(-) T/C downstream_transcript_variant
rs1000212868 -- 48,674,161(-) A/C intron_variant
rs1000486478 -- 48,673,832(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372107 Gene

Disorders for LOC105372107 Gene

No disorders were found for LOC105372107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372107 Gene

Publications for LOC105372107 Gene

No publications were found for LOC105372107 Gene.

Products for LOC105372107 Gene

Sources for LOC105372107 Gene

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