Aliases for LOC105372071 Gene

Subcategory (RNA class) for LOC105372071 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC105372071 Gene

  • Uncharacterized LOC105372071 3
  • Lnc-TPGS2-79 165

External Ids for LOC105372071 Gene

Previous GeneCards Identifiers for LOC105372071 Gene

  • GC18U900885

Summaries for LOC105372071 Gene

GeneCards Summary for LOC105372071 Gene

LOC105372071 (Uncharacterized LOC105372071) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372071 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372071 Gene

Genomics for LOC105372071 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105372071 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J036663 Enhancer 0.5 Ensembl 600.7 -0.2 -183 0.4 ATF7 PRDM10 CEBPB CEBPG ATF4 ATF3 IRF9 ZBTB40 LOC105372071 lnc-TPGS2-11 KIAA1328 FHOD3
GH18J036691 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.3 -29.9 -29865 3.3 ZNF7 FOXA1 CEBPA FOXA2 CREB1 BHLHE40 BATF JUND TFAP4 GLIS1 TPGS2 LOC105372071 lnc-TPGS2-11 KIAA1328 FHOD3
GH18J036636 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +28.7 28717 2.6 STAT3 RELA IKZF2 EED DPF2 RELB RUNX3 GATAD2B BCLAF1 BCL11A TPGS2 ENSG00000267707 FHOD3 LOC105372071 piR-61101-319 KIAA1328
GH18J036671 Enhancer 0.6 ENCODE 0.4 -9.5 -9502 1.9 CEBPG CEBPB TCF7L2 NFE2 ZSCAN5C YY1 MAFG EP300 SPI1 STAT3 TPGS2 LOC105372071 lnc-TPGS2-11 KIAA1328 FHOD3
GH18J036578 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +81.9 81917 6.2 CTCF ZNF512 KDM1A POLR2A EED JUND CEBPB RUNX3 NR2C2 YY1 FHOD3 piR-61101-319 LOC105372071 KIAA1328
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372071 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372071 Gene

Genomic Locations for LOC105372071 Gene
chr18:36,660,389-36,663,418
(GRCh38/hg38)
Size:
3,030 bases
Orientation:
Minus strand

Genomic View for LOC105372071 Gene

Genes around LOC105372071 on UCSC Golden Path with GeneCards custom track
LOC105372071 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372071 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372071 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372071 Gene

Proteins for LOC105372071 Gene

Post-translational modifications for LOC105372071 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372071 Gene

Domains & Families for LOC105372071 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372071 Gene

Function for LOC105372071 Gene

Phenotypes From GWAS Catalog for LOC105372071 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372071 Gene

Localization for LOC105372071 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372071 Gene

Pathways & Interactions for LOC105372071 Gene

PathCards logo

SuperPathways for LOC105372071 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372071 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372071 Gene

Drugs & Compounds for LOC105372071 Gene

No Compound Related Data Available

Transcripts for LOC105372071 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372071 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008E399C_9606 lncRNA 380 2

RefSeq: NR_132982,

LNCipedia: lnc-TPGS2-79:1,

LOC105372071 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372071 Gene

No ASD Table

Relevant External Links for LOC105372071 Gene

GeneLoc Exon Structure for
LOC105372071

No data available for mRNA/cDNA for LOC105372071 Gene

Expression for LOC105372071 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372071 Gene

Orthologs for LOC105372071 Gene

No data available for Orthologs and Evolution for LOC105372071 Gene

Paralogs for LOC105372071 Gene

No data available for Paralogs for LOC105372071 Gene

Variants for LOC105372071 Gene

Additional dbSNP identifiers (rs#s) for LOC105372071 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372071 Gene

Disorders for LOC105372071 Gene

No disorders were found for LOC105372071 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372071 Gene

Publications for LOC105372071 Gene

No publications were found for LOC105372071 Gene.

No data available for Mastermind for LOC105372071 Gene

Products for LOC105372071 Gene

Sources for LOC105372071 Gene