LOC105372069 Gene (RNA Gene)

Uncharacterized LOC105372069

GC18M036902
GIFtS:
8
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Aliases for LOC105372069 Gene

Subcategory (RNA class) for LOC105372069 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105372069 Gene

  • Uncharacterized LOC105372069 3
  • Novel Transcript, Antisense To KIAA1328 5
  • NONHSAG023711.2 91
  • HSALNG0120972 164
  • Lnc-TPGS2-1 165
  • AC016493.1 5

External Ids for LOC105372069 Gene

Previous GeneCards Identifiers for LOC105372069 Gene

  • GC18U901116
  • GC18M036845

Summaries for LOC105372069 Gene

GeneCards Summary for LOC105372069 Gene

LOC105372069 (Uncharacterized LOC105372069) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372069 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372069 Gene

Genomics for LOC105372069 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105372069 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J036900 Enhancer 0.9 VISTA UCNEbase 0.4 +23.2 23185 1 LEF1 TAF9B NCOR1 FOXM1 ATF3 KDM1A MEIS2 SMARCA4 MNT RLF LOC105372069 lnc-TPGS2-2 TPGS2 KIAA1328 lnc-TPGS2-5 CELF4
GH18J036902 Enhancer 0.7 Ensembl 0.4 +22.5 22521 0.2 ARHGAP35 LEF1 JUND PKNOX1 DPF2 HDAC1 SOX6 EP300 EGR1 TAF9B LOC105372069 lnc-TPGS2-2 TPGS2 KIAA1328 lnc-TPGS2-5 CELF4
GH18J036912 Enhancer 0.5 Ensembl 0.4 +10.9 10921 1 RUNX3 ATF4 CEBPG POLR2A ZNF354B ENSG00000267707 ELP2 CELF4 TPGS2 LOC105372069 lnc-TPGS2-5 lnc-TPGS2-2 KIAA1328
GH18J036850 Enhancer 0.9 Ensembl ENCODE 0.2 +73.2 73221 1.6 JUND FOXA1 PKNOX1 ZNF24 DPF2 SOX6 HMBOX1 CEBPB CTBP1 NFE2 TPGS2 ENSG00000267707 lnc-TPGS2-2 KIAA1328 LOC105372069 lnc-TPGS2-5 CELF4
GH18J036903 Enhancer 0.4 Ensembl 0.4 +19.9 19921 0.2 NFE2 MAFG NFE2L2 MAFK LOC105372069 TPGS2 lnc-TPGS2-2 lnc-TPGS2-5 KIAA1328 CELF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372069 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372069 Gene

Genomic Locations for LOC105372069 Gene
chr18:36,901,945-36,923,822
(GRCh38/hg38)
Size:
21,878 bases
Orientation:
Minus strand
chr18:34,481,909-34,503,777
(GRCh37/hg19)
Size:
21,869 bases
Orientation:
Minus strand

Genomic View for LOC105372069 Gene

Genes around LOC105372069 on UCSC Golden Path with GeneCards custom track
LOC105372069 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372069 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372069 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372069 Gene

Proteins for LOC105372069 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105372069 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372069 Gene

Domains & Families for LOC105372069 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372069 Gene

Function for LOC105372069 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105372069 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372069 Gene

Localization for LOC105372069 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372069 Gene

Pathways & Interactions for LOC105372069 Gene

PathCards logo

SuperPathways for LOC105372069 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372069 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372069 Gene

Drugs & Compounds for LOC105372069 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC105372069 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372069 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001525F6_9606 lncRNA 688 2

Ensembl: ENST00000586106 (view in UCSC) ,

LNCipedia: lnc-TPGS2-1:1,

URS0000A772D3_9606 lncRNA 689 1

RefSeq: NR_134585,

URS00008B3ACD_9606 lncRNA 689 2

LNCipedia: lnc-TPGS2-1:2,

NONCODE: NONHSAT058979.2,

URS00009B57C7_9606 lncRNA 240 2

LncBook: HSALNT0250018,

NONCODE: NONHSAT178375.1,

LOC105372069 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105372069 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372069 Gene

No ASD Table

Relevant External Links for LOC105372069 Gene

GeneLoc Exon Structure for
LOC105372069

Expression for LOC105372069 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372069 Gene

Orthologs for LOC105372069 Gene

Evolution for LOC105372069 Gene

ENSEMBL:
Gene Tree for LOC105372069 (if available)
TreeFam:
Gene Tree for LOC105372069 (if available)

No data available for Orthologs for LOC105372069 Gene

Paralogs for LOC105372069 Gene

No data available for Paralogs for LOC105372069 Gene

Variants for LOC105372069 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC105372069 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372069 Gene

Disorders for LOC105372069 Gene

Additional Disease Information for LOC105372069

Open Targets Platform

No disorders were found for LOC105372069 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105372069 Gene

Publications for LOC105372069 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC105372069 Gene

Products for LOC105372069 Gene

Sources for LOC105372069 Gene