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Aliases for LOC105372069 Gene

Subcategory (RNA class) for LOC105372069 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372069 Gene

  • Uncharacterized LOC105372069 3
  • AC016493.1 5

External Ids for LOC105372069 Gene

Previous GeneCards Identifiers for LOC105372069 Gene

  • GC18U901116

Summaries for LOC105372069 Gene

GeneCards Summary for LOC105372069 Gene

LOC105372069 (Uncharacterized LOC105372069) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372069 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372069 Gene

Genomics for LOC105372069 Gene

GeneHancer (GH) Regulatory Elements for LOC105372069 Gene

Promoters and enhancers for LOC105372069 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J036900 Enhancer 1 VISTA UCNEbase 0.3 +23.2 23198 1 MEIS2 LEF1 TAF9B TEAD4 NCOA1 MNT NCOR1 SMARCA4 EGR1 RLF LOC105372069 KIAA1328 TPGS2
GH18J036947 Enhancer 0.5 ENCODE 0.3 -24.3 -24262 1.8 SP1 NANOG POU5F1 DPF2 ENSG00000267707 LOC105372069 GC18P037055 KIAA1328
GH18J036850 Enhancer 0.7 ENCODE 0.2 +73.2 73208 0.9 MEIS2 ATF1 PKNOX1 JUN FOSL1 CTBP1 FOXK2 POLR2A NCOR1 FOS ENSG00000267707 TPGS2 KIAA1328 LOC105372069
GH18J036952 Enhancer 0.2 FANTOM5 0.3 -29.3 -29328 0.4 LOC105372069 GC18P037055 KIAA1328
GH18J036830 Enhancer 0.2 ENCODE 0.2 +93.0 93026 0.1 KIAA1328 TPGS2 LOC105372069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372069 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372069 Gene

Genomic Locations for LOC105372069 Gene
chr18:36,845,224-36,923,835
(GRCh38/hg38)
Size:
78,612 bases
Orientation:
Minus strand
chr18:34,481,909-34,503,777
(GRCh37/hg19)
Size:
21,869 bases
Orientation:
Minus strand

Genomic View for LOC105372069 Gene

Genes around LOC105372069 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372069 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372069 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372069 Gene

Proteins for LOC105372069 Gene

Post-translational modifications for LOC105372069 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372069 Gene

Domains & Families for LOC105372069 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372069 Gene

Function for LOC105372069 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372069 Gene

Localization for LOC105372069 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372069 Gene

Pathways & Interactions for LOC105372069 Gene

SuperPathways for LOC105372069 Gene

No Data Available

Interacting Proteins for LOC105372069 Gene

Gene Ontology (GO) - Biological Process for LOC105372069 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372069 Gene

Drugs & Compounds for LOC105372069 Gene

No Compound Related Data Available

Transcripts for LOC105372069 Gene

mRNA/cDNA for LOC105372069 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372069 Gene

No ASD Table

Relevant External Links for LOC105372069 Gene

GeneLoc Exon Structure for
LOC105372069

Expression for LOC105372069 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372069 Gene

Orthologs for LOC105372069 Gene

Evolution for LOC105372069 Gene

ENSEMBL:
Gene Tree for LOC105372069 (if available)
TreeFam:
Gene Tree for LOC105372069 (if available)

No data available for Orthologs for LOC105372069 Gene

Paralogs for LOC105372069 Gene

No data available for Paralogs for LOC105372069 Gene

Variants for LOC105372069 Gene

Sequence variations from dbSNP and Humsavar for LOC105372069 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000071875 -- 36,925,200(-) A/G upstream_transcript_variant
rs1000187424 -- 36,921,086(-) C/T non_coding_transcript_variant
rs1000304837 -- 36,914,284(-) A/G intron_variant
rs1000458846 -- 36,907,150(-) C/G intron_variant
rs1000584135 -- 36,922,844(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372069 Gene

Disorders for LOC105372069 Gene

Additional Disease Information for LOC105372069

No disorders were found for LOC105372069 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105372069 Gene

Publications for LOC105372069 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC105372069 Gene

Sources for LOC105372069 Gene

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