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Aliases for LOC105372019 Gene

Subcategory (RNA class) for LOC105372019 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372019 Gene

  • Uncharacterized LOC105372019 3
  • AC027449.1 5

External Ids for LOC105372019 Gene

Previous GeneCards Identifiers for LOC105372019 Gene

  • GC18U900979

Summaries for LOC105372019 Gene

GeneCards Summary for LOC105372019 Gene

LOC105372019 (Uncharacterized LOC105372019) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372019 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372019 Gene

Genomics for LOC105372019 Gene

GeneHancer (GH) Regulatory Elements for LOC105372019 Gene

Promoters and enhancers for LOC105372019 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J022163 Promoter/Enhancer 3.1 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 +168.2 168155 36.4 FEZF1 YY1 ZNF213 ZNF263 SP3 ZFP41 MEF2D SSRP1 ZNF610 GLIS1 GATA6 RNU6-702P GC18M022181 ESCO1 RBBP8 MIB1 SNRPD1 LOC105372019 ENSG00000264012 GATA6-AS1
GH18J022339 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +4.0 3985 11.3 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 YY1 ZNF121 GLIS2 ZNF213 SP3 ESCO1 LOC105372019 LOC101927548
GH18J022323 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.0 25037 1.8 CTCF PKNOX1 MAX ZIC2 RAD21 NCOA2 ZNF121 ZNF335 ZFHX2 ZNF316 LOC101927548 LOC105372019
GH18J022391 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 -42.2 -42194 1.6 RFX1 ZBTB6 JUN ZNF398 ZNF518A FOSL1 ZFP69B ZNF335 NFIC ZNF366 CTAGE1 LOC105372019
GH18J022335 Enhancer 0.7 ENCODE dbSUPER 0.4 +13.6 13637 1.2 SP1 RXRA DACH1 HNF4A NR2F2 LOC105372019 LOC101927548
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372019 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372019 Gene

Genomic Locations for LOC105372019 Gene
chr18:22,347,846-22,349,645
(GRCh38/hg38)
Size:
1,800 bases
Orientation:
Minus strand
chr18:19,927,809-19,928,215
(GRCh37/hg19)
Size:
407 bases
Orientation:
Minus strand

Genomic View for LOC105372019 Gene

Genes around LOC105372019 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372019 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372019 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372019 Gene

Proteins for LOC105372019 Gene

Post-translational modifications for LOC105372019 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372019 Gene

Domains & Families for LOC105372019 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372019 Gene

Function for LOC105372019 Gene

Phenotypes From GWAS Catalog for LOC105372019 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372019 Gene

Localization for LOC105372019 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372019 Gene

Pathways & Interactions for LOC105372019 Gene

SuperPathways for LOC105372019 Gene

No Data Available

Interacting Proteins for LOC105372019 Gene

Gene Ontology (GO) - Biological Process for LOC105372019 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372019 Gene

Drugs & Compounds for LOC105372019 Gene

No Compound Related Data Available

Transcripts for LOC105372019 Gene

mRNA/cDNA for LOC105372019 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372019 Gene

No ASD Table

Relevant External Links for LOC105372019 Gene

GeneLoc Exon Structure for
LOC105372019

Expression for LOC105372019 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372019 Gene

Orthologs for LOC105372019 Gene

Evolution for LOC105372019 Gene

ENSEMBL:
Gene Tree for LOC105372019 (if available)
TreeFam:
Gene Tree for LOC105372019 (if available)

No data available for Orthologs for LOC105372019 Gene

Paralogs for LOC105372019 Gene

No data available for Paralogs for LOC105372019 Gene

Variants for LOC105372019 Gene

Sequence variations from dbSNP and Humsavar for LOC105372019 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1001804003 -- 22,347,572(-) C/G downstream_transcript_variant
rs1002752736 -- 22,348,544(-) G/A non_coding_transcript_variant
rs1003599020 -- 22,351,427(-) T/A upstream_transcript_variant
rs1003756296 -- 22,350,070(-) AA/ upstream_transcript_variant
rs1003787923 -- 22,351,541(-) G/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372019 Gene

Disorders for LOC105372019 Gene

No disorders were found for LOC105372019 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372019 Gene

Publications for LOC105372019 Gene

No publications were found for LOC105372019 Gene.

Products for LOC105372019 Gene

Sources for LOC105372019 Gene

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