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Aliases for LOC105372009 Gene

Subcategory (RNA class) for LOC105372009 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372009 Gene

  • Uncharacterized LOC105372009 3
  • AP005121.1 5

External Ids for LOC105372009 Gene

Previous GeneCards Identifiers for LOC105372009 Gene

  • GC18U900901

Summaries for LOC105372009 Gene

GeneCards Summary for LOC105372009 Gene

LOC105372009 (Uncharacterized LOC105372009) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372009 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372009 Gene

Genomics for LOC105372009 Gene

GeneHancer (GH) Regulatory Elements for LOC105372009 Gene

Promoters and enhancers for LOC105372009 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J014918 Enhancer 0.8 ENCODE dbSUPER 13.4 +18.7 18702 4.2 CTCF FOXA2 NFIA RXRA MAX RAD21 FOXA1 ZNF205 YY1 SP1 LOC105372009 LOC105372010 LINC01443
GH18J014932 Enhancer 0.5 ENCODE dbSUPER 10.8 +31.9 31856 2.9 CTCF LOC105372009 LINC01443 LOC105372010
GH18J014923 Enhancer 0.2 dbSUPER 11.9 +21.0 21037 0.4 LOC105372009 LOC105372010 LINC01443
GH18J014931 Enhancer 0.2 dbSUPER 9.4 +29.8 29849 0.6 LOC105372009 LINC01443 LOC105372010
GH18J014945 Enhancer 0.2 dbSUPER 6.3 +43.8 43758 1.2 LINC01443 LOC105372009 LOC105372010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372009 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372009 Gene

Genomic Locations for LOC105372009 Gene
chr18:14,902,200-14,941,129
(GRCh38/hg38)
Size:
38,930 bases
Orientation:
Plus strand
chr18:14,903,579-14,915,627
(GRCh37/hg19)
Size:
12,049 bases
Orientation:
Plus strand

Genomic View for LOC105372009 Gene

Genes around LOC105372009 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372009 Gene

Proteins for LOC105372009 Gene

Post-translational modifications for LOC105372009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372009 Gene

Domains & Families for LOC105372009 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372009 Gene

Function for LOC105372009 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372009 Gene

Localization for LOC105372009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372009 Gene

Pathways & Interactions for LOC105372009 Gene

SuperPathways for LOC105372009 Gene

No Data Available

Interacting Proteins for LOC105372009 Gene

Gene Ontology (GO) - Biological Process for LOC105372009 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372009 Gene

Drugs & Compounds for LOC105372009 Gene

No Compound Related Data Available

Transcripts for LOC105372009 Gene

mRNA/cDNA for LOC105372009 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372009 Gene

No ASD Table

Relevant External Links for LOC105372009 Gene

GeneLoc Exon Structure for
LOC105372009

Expression for LOC105372009 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372009 Gene

Orthologs for LOC105372009 Gene

Evolution for LOC105372009 Gene

ENSEMBL:
Gene Tree for LOC105372009 (if available)
TreeFam:
Gene Tree for LOC105372009 (if available)

No data available for Orthologs for LOC105372009 Gene

Paralogs for LOC105372009 Gene

No data available for Paralogs for LOC105372009 Gene

Variants for LOC105372009 Gene

Sequence variations from dbSNP and Humsavar for LOC105372009 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000020993 -- 14,924,792(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000091331 -- 14,913,222(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000103897 -- 14,935,118(+) T/C intron_variant
rs1000170027 -- 14,936,401(+) C/T intron_variant
rs1000239711 -- 14,910,353(+) G/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372009 Gene

Disorders for LOC105372009 Gene

No disorders were found for LOC105372009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372009 Gene

Publications for LOC105372009 Gene

No publications were found for LOC105372009 Gene.

Products for LOC105372009 Gene

Sources for LOC105372009 Gene

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