Aliases for LOC105371988 Gene

Subcategory (RNA class) for LOC105371988 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371988 Gene

  • Uncharacterized LOC105371988 3

External Ids for LOC105371988 Gene

Previous GeneCards Identifiers for LOC105371988 Gene

  • GC18U901137

Summaries for LOC105371988 Gene

GeneCards Summary for LOC105371988 Gene

LOC105371988 (Uncharacterized LOC105371988) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371988 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371988 Gene

Genomics for LOC105371988 Gene

GeneHancer (GH) Regulatory Elements for LOC105371988 Gene

Promoters and enhancers for LOC105371988 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J010403 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 750.6 +0.1 97 4.2 NFIB ZIC2 EZH2 NFIC CEBPG CEBPB CTCF GLIS1 ENSG00000287563 LOC105371988 APCDD1 LINC01254 lnc-APCDD1-3
GH18J010400 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.6 -3.5 -3503 2.6 ETV6 VEZF1 lnc-PIEZO2-12 APCDD1 NAPG VAPA LOC105371988 LOC105371989 lnc-APCDD1-3
GH18J010412 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +8.7 8652 1.9 ZBTB40 REST CTBP1 EHMT2 GABPA MNT ZNF687 KLF1 LINC01254 APCDD1 ENSG00000287563 LOC105371988 lnc-APCDD1-3
GH18J010416 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +12.7 12693 1.7 MNT MYC FOSL2 RFX1 CTBP1 KLF4 PKNOX1 ZNF592 DPF2 ZNF687 APCDD1 LINC01254 LOC105371988 ENSG00000287563 RF00017-2620 lnc-APCDD1-3
GH18J010419 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +16.6 16596 4 TEAD4 CBFA2T2 MLLT1 IKZF1 SOX6 CTBP1 FOSL1 ZNF644 CEBPB TCF12 APCDD1 LINC01254 RF00017-2620 ENSG00000287563 LOC105371988
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371988 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371988 Gene

Genomic Locations for LOC105371988 Gene
chr18:10,404,804-10,425,250
(GRCh38/hg38)
Size:
20,447 bases
Orientation:
Plus strand

Genomic View for LOC105371988 Gene

Genes around LOC105371988 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371988 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371988 Gene

Proteins for LOC105371988 Gene

Post-translational modifications for LOC105371988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371988 Gene

Domains & Families for LOC105371988 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371988 Gene

Function for LOC105371988 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371988 Gene

Localization for LOC105371988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371988 Gene

Pathways & Interactions for LOC105371988 Gene

PathCards logo

SuperPathways for LOC105371988 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371988 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371988 Gene

Drugs & Compounds for LOC105371988 Gene

No Compound Related Data Available

Transcripts for LOC105371988 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371988 Gene

No ASD Table

Relevant External Links for LOC105371988 Gene

GeneLoc Exon Structure for
LOC105371988

No data available for mRNA/cDNA for LOC105371988 Gene

Expression for LOC105371988 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371988 Gene

Orthologs for LOC105371988 Gene

No data available for Orthologs and Evolution for LOC105371988 Gene

Paralogs for LOC105371988 Gene

No data available for Paralogs for LOC105371988 Gene

Variants for LOC105371988 Gene

Sequence variations from dbSNP and Humsavar for LOC105371988 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000232939 -- 10,417,880(+) /T intron_variant
rs1000408131 -- 10,402,811(+) G/A/T upstream_transcript_variant
rs1000867628 -- 10,407,018(+) A/T intron_variant
rs1000895229 -- 10,412,112(+) A/G intron_variant
rs1000932066 -- 10,412,992(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371988 Gene

Disorders for LOC105371988 Gene

No disorders were found for LOC105371988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371988 Gene

Publications for LOC105371988 Gene

No publications were found for LOC105371988 Gene.

No data available for External Links for LOC105371988 Gene

Products for LOC105371988 Gene

Sources for LOC105371988 Gene