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Aliases for LOC105371972 Gene

Subcategory (RNA class) for LOC105371972 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371972 Gene

  • Uncharacterized LOC105371972 3

External Ids for LOC105371972 Gene

Previous GeneCards Identifiers for LOC105371972 Gene

  • GC18U901153

Summaries for LOC105371972 Gene

GeneCards Summary for LOC105371972 Gene

LOC105371972 (Uncharacterized LOC105371972) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371972 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371972 Gene

Genomics for LOC105371972 Gene

GeneHancer (GH) Regulatory Elements for LOC105371972 Gene

Promoters and enhancers for LOC105371972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J006557 Enhancer 0.8 Ensembl ENCODE 600.7 -0.4 -372 3.2 CBFA2T2 ZIC2 ZSCAN4 ZFHX2 RCOR1 ZNF335 EZH2 TEAD2 ZBTB6 TEAD4 LOC105371972 ENSG00000265174 ARHGAP28 LINC01387
GH18J006560 Enhancer 1 Ensembl ENCODE 0.7 +3.3 3307 1.8 CBFA2T2 ZNF121 SP7 SMARCA4 PKNOX1 DPF2 ZNF600 ZIC2 ATF1 ZNF629 ARHGAP28 LOC105371972 GC18P006568 LINC01387
GH18J006565 Enhancer 0.7 Ensembl ENCODE 0.4 +8.0 8046 2.8 PRDM1 TCF7L2 CEBPB MAX EP300 STAT3 CEBPG GC18P006568 ARHGAP28 LOC105371972 LINC01387
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371972 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371972 Gene

Genomic Locations for LOC105371972 Gene
chr18:6,558,573-6,569,397
(GRCh38/hg38)
Size:
10,825 bases
Orientation:
Plus strand

Genomic View for LOC105371972 Gene

Genes around LOC105371972 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371972 Gene

Proteins for LOC105371972 Gene

Post-translational modifications for LOC105371972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371972 Gene

Domains & Families for LOC105371972 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371972 Gene

Function for LOC105371972 Gene

Phenotypes From GWAS Catalog for LOC105371972 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371972 Gene

Localization for LOC105371972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371972 Gene

Pathways & Interactions for LOC105371972 Gene

PathCards logo

SuperPathways for LOC105371972 Gene

No Data Available

Interacting Proteins for LOC105371972 Gene

Gene Ontology (GO) - Biological Process for LOC105371972 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371972 Gene

Drugs & Compounds for LOC105371972 Gene

No Compound Related Data Available

Transcripts for LOC105371972 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371972 Gene

No ASD Table

Relevant External Links for LOC105371972 Gene

GeneLoc Exon Structure for
LOC105371972

No data available for mRNA/cDNA for LOC105371972 Gene

Expression for LOC105371972 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371972 Gene

Orthologs for LOC105371972 Gene

No data available for Orthologs and Evolution for LOC105371972 Gene

Paralogs for LOC105371972 Gene

No data available for Paralogs for LOC105371972 Gene

Variants for LOC105371972 Gene

Sequence variations from dbSNP and Humsavar for LOC105371972 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000063422 -- 6,561,357(+) AGCCAG/AG intron_variant
rs1000070506 -- 6,562,765(+) C/T intron_variant
rs1000078423 -- 6,565,749(+) C/G/T intron_variant
rs1000767534 -- 6,569,494(+) C/T downstream_transcript_variant
rs1000810954 -- 6,559,836(+) A/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371972 Gene

Disorders for LOC105371972 Gene

No disorders were found for LOC105371972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371972 Gene

Publications for LOC105371972 Gene

No publications were found for LOC105371972 Gene.

No data available for External Links for LOC105371972 Gene

Products for LOC105371972 Gene

Sources for LOC105371972 Gene

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