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Aliases for LOC105371965 Gene

Subcategory (RNA class) for LOC105371965 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371965 Gene

  • Uncharacterized LOC105371965 3

External Ids for LOC105371965 Gene

Previous GeneCards Identifiers for LOC105371965 Gene

  • GC18U901000

Summaries for LOC105371965 Gene

GeneCards Summary for LOC105371965 Gene

LOC105371965 (Uncharacterized LOC105371965) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371965 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371965 Gene

Genomics for LOC105371965 Gene

GeneHancer (GH) Regulatory Elements for LOC105371965 Gene

Promoters and enhancers for LOC105371965 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J003480 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 +0.4 365 2.6 CTCF RAD21 SMARCA4 PRDM10 REST HDAC1 CTBP1 HDAC2 MEF2D POLR2A LOC105371965 GAPLINC
GH18J003483 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -3.8 -3833 3.4 REST RUNX3 JUNB NFIC BATF ETV6 MYOM1 LOC105371965 GC18P003536
GH18J003465 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +15.1 15118 2.2 ZNF148 IKZF1 LEF1 ZNF766 FOSL1 JUN BRF2 VEZF1 PRDM10 NANOG GAPLINC DLGAP1-AS1 MYL12B LOC105371965 GC18P003299
GH18J003468 Promoter/Enhancer 1.2 Ensembl dbSUPER 0.4 +12.8 12777 0.2 CBFA2T2 ZNF148 TRIM24 SMARCA4 ATF1 ATF7 LEF1 EP300 ATF2 VEZF1 DLGAP1-AS1 MYL12B GAPLINC LOC105371965 GC18P003299
GH18J003511 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -30.6 -30623 1.4 CBFA2T2 BACH1 MLLT1 SMARCA4 FOSL2 GMEB1 DPF2 PRDM10 CTBP1 ZNF316 GC18P003536 LOC105371965 DLGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371965 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371965 Gene

Genomic Locations for LOC105371965 Gene
chr18:3,461,844-3,481,678
(GRCh38/hg38)
Size:
19,835 bases
Orientation:
Minus strand

Genomic View for LOC105371965 Gene

Genes around LOC105371965 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371965 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371965 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371965 Gene

Proteins for LOC105371965 Gene

Post-translational modifications for LOC105371965 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371965 Gene

Domains & Families for LOC105371965 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371965 Gene

Function for LOC105371965 Gene

Phenotypes From GWAS Catalog for LOC105371965 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371965 Gene

Localization for LOC105371965 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371965 Gene

Pathways & Interactions for LOC105371965 Gene

PathCards logo

SuperPathways for LOC105371965 Gene

No Data Available

Interacting Proteins for LOC105371965 Gene

Gene Ontology (GO) - Biological Process for LOC105371965 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371965 Gene

Drugs & Compounds for LOC105371965 Gene

No Compound Related Data Available

Transcripts for LOC105371965 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371965 Gene

No ASD Table

Relevant External Links for LOC105371965 Gene

GeneLoc Exon Structure for
LOC105371965

No data available for mRNA/cDNA for LOC105371965 Gene

Expression for LOC105371965 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371965 Gene

Orthologs for LOC105371965 Gene

No data available for Orthologs and Evolution for LOC105371965 Gene

Paralogs for LOC105371965 Gene

No data available for Paralogs for LOC105371965 Gene

Variants for LOC105371965 Gene

Sequence variations from dbSNP and Humsavar for LOC105371965 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000006244 -- 3,479,836(-) T/C intron_variant
rs1000129955 -- 3,483,060(-) C/A upstream_transcript_variant
rs1000153729 -- 3,466,047(-) C/T intron_variant
rs1000302133 -- 3,477,471(-) C/A/T intron_variant
rs1000352760 -- 3,472,208(-) AA/ intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371965 Gene

Disorders for LOC105371965 Gene

No disorders were found for LOC105371965 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371965 Gene

Publications for LOC105371965 Gene

No publications were found for LOC105371965 Gene.

No data available for External Links for LOC105371965 Gene

Products for LOC105371965 Gene

Sources for LOC105371965 Gene

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