LOC105371900 Gene (RNA Gene)

Uncharacterized LOC105371900

GC17M077107
GIFtS:
4

Aliases for LOC105371900 Gene

Subcategory (RNA class) for LOC105371900 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371900 Gene

  • Uncharacterized LOC105371900 3

External Ids for LOC105371900 Gene

Previous GeneCards Identifiers for LOC105371900 Gene

  • GC17U902361

Summaries for LOC105371900 Gene

GeneCards Summary for LOC105371900 Gene

LOC105371900 (Uncharacterized LOC105371900) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371900 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371900 Gene

Genomics for LOC105371900 Gene

GeneHancer (GH) Regulatory Elements for LOC105371900 Gene

Promoters and enhancers for LOC105371900 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077114 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -4.1 -4119 18.7 SIN3A SREBF1 FOXA1 MLX RBPJ SMARCE1 POLR2A USF2 NR2F6 ATF1 HSALNG0118902 SRSF2 MFSD11 METTL23 SEPTIN9 ENSG00000267546 RNU4-47P SNHG16 SPHK1 ENSG00000261335
GH17J077106 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +10.4 10380 5.9 ZNF24 SP1 ZBTB6 LCORL RBPJ SMARCE1 NR2F6 ATF1 ETV6 RELA SEC14L1 SRSF2 RNU4-47P RHBDF2 SEPTIN9 JMJD6 QRICH2 lnc-MGAT5B-4 lnc-MGAT5B-3 LOC105371900
GH17J077113 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.4 +5.9 5881 0.4 ZNF652 RNU4-47P lnc-MGAT5B-4 LOC105371900 SEC14L1
GH17J077115 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.4 +5.4 5381 0.2 RNU4-47P lnc-MGAT5B-4 LOC105371900 SEC14L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371900 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371900 Gene

Genomic Locations for LOC105371900 Gene
chr17:77,107,080-77,120,082
(GRCh38/hg38)
Size:
13,003 bases
Orientation:
Minus strand

Genomic View for LOC105371900 Gene

Genes around LOC105371900 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371900 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371900 Gene

Proteins for LOC105371900 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371900 Gene

Domains & Families for LOC105371900 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371900 Gene

Function for LOC105371900 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105371900 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371900 Gene

Localization for LOC105371900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371900 Gene

Pathways & Interactions for LOC105371900 Gene

PathCards logo

SuperPathways for LOC105371900 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371900 Gene

Drugs & Compounds for LOC105371900 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371900 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371900 Gene

No ASD Table

Relevant External Links for LOC105371900 Gene

GeneLoc Exon Structure for
LOC105371900

No data available for mRNA/cDNA for LOC105371900 Gene

Expression for LOC105371900 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371900 Gene

Orthologs for LOC105371900 Gene

No data available for Orthologs and Evolution for LOC105371900 Gene

Paralogs for LOC105371900 Gene

No data available for Paralogs for LOC105371900 Gene

Variants for LOC105371900 Gene

Sequence variations from dbSNP and Humsavar for LOC105371900 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000017415 -- 77,118,771(-) A/C non_coding_transcript_variant
rs1000154394 -- 77,118,562(-) C/G non_coding_transcript_variant
rs1000330661 -- 77,117,973(-) A/T intron_variant
rs1000459562 -- 77,107,448(-) C/T intron_variant
rs1000818336 -- 77,111,070(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371900 Gene

Disorders for LOC105371900 Gene

No disorders were found for LOC105371900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371900 Gene

Publications for LOC105371900 Gene

No publications were found for LOC105371900 Gene.

No data available for External Links for LOC105371900 Gene

Products for LOC105371900 Gene

Sources for LOC105371900 Gene