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Aliases for LOC105371899 Gene
Subcategory (RNA class) for LOC105371899 Gene
lncRNA
Aliases for LOC105371899 Gene
External Ids for LOC105371899 Gene
- NCBI Entrez Gene: 105371899
- Ensembl: ENSG00000267568
Previous GeneCards Identifiers for LOC105371899 Gene
- GC17U902467
Summaries for LOC105371899 Gene
GeneCards Summary for LOC105371899 Gene
LOC105371899 (Uncharacterized LOC105371899) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105371899 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371899 Gene
Genomics for LOC105371899 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105371899 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076968 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | +0.2 | 218 | 2.2 | ZIC2 ZNF610 ZNF341 KLF9 YY1 BHLHE40 ZNF24 ZBTB48 ZNF189 TAF1 | ENSG00000280122 LOC105371899 EVPL HSALNG0118887 MGAT5B SEC14L1 | |
| GH17J076981 | Enhancer | 0.8 | Ensembl CraniofacialAtlas | 0.4 | -13.2 | -13210 | 2.3 | ZIC2 ZNF341 EBF1 ZNF316 BHLHE40 RFX1 GLIS1 NR2F6 EGR2 PRDM10 | SEPTIN9 PRPSAP1 LOC105371899 ENSG00000280122 RF00017-2561 SEC14L1 MGAT5B | |
| GH17J076971 | Enhancer | 0.4 | Ensembl | 0.7 | -3.1 | -3071 | 1.6 | ZIC2 GLIS1 POLR2A | ENSG00000280122 LOC105371899 HSALNG0118887 RF00017-2561 MGAT5B SEC14L1 | |
| GH17J076957 | Enhancer | 0.6 | FANTOM5 Ensembl ENCODE | 0.4 | +11.5 | 11530 | 1.6 | ZIC2 | ENSG00000267521 AANAT MGAT5B HSALNG0118884 LOC105371899 SEC14L1 | |
| GH17J076956 | Enhancer | 0.2 | Ensembl | 0.4 | +12.9 | 12929 | 0.4 | ENSG00000267521 HSALNG0118884 LOC105371899 MGAT5B SEC14L1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105371899 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105371899 Gene
Latest Assembly
- chr17:76,950,316-76,969,530
- (GRCh38/hg38)
- Size:
- 19,215 bases
- Orientation:
- Minus strand
Previous Assembly
- chr17:74,946,556-74,965,281
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 18,726 bases
- Orientation:
- Minus strand
- chr17:74,946,399-74,965,238
- (GRCh37/hg19 by Ensembl)
- Size:
- 18,840 bases
- Orientation:
- Minus strand
Genomic View for LOC105371899 Gene
Genes around LOC105371899 on UCSC Golden Path with GeneCards custom track
LOC105371899 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.2 by Entrez Gene
- 17q25.2 by Ensembl
LOC105371899 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105371899 Gene
Proteins for LOC105371899 Gene
Post-translational modifications for LOC105371899 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC105371899 Gene
Domains & Families for LOC105371899 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371899 Gene
Function for LOC105371899 Gene
Phenotypes From GWAS Catalog for LOC105371899 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371899 Gene
Localization for LOC105371899 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371899 Gene
Transcripts for LOC105371899 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371899 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B8B64_9606 | lncRNA | 284 | 4 |
Ensembl: ENST00000585902 (view in UCSC) , LncBook: HSALNT0245525, LNCipedia: lnc-SRSF2-2:3, NONCODE: NONHSAT056097.2, |
| URS00008BFA6F_9606 | lncRNA | 623 | 3 |
Ensembl: ENST00000563583 (view in UCSC) , LNCipedia: lnc-SRSF2-2:2, NONCODE: NONHSAT056100.2, |
| URS00008BE21E_9606 | lncRNA | 613 | 3 |
Ensembl: ENST00000564292 (view in UCSC) , LNCipedia: lnc-SRSF2-2:1, NONCODE: NONHSAT056098.2, |
| URS0000A76978_9606 | lncRNA | 656 | 2 |
RefSeq: NR_136417, LNCipedia: lnc-SRSF2-2:10, |
| URS0000A776FD_9606 | lncRNA | 871 | 1 |
RefSeq: NR_136416, |
LOC105371899 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105371899 Gene
- 5 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC105371899 Gene
- GeneLoc Exon Structure for
- LOC105371899
Expression for LOC105371899 Gene
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371899 Gene
Orthologs for LOC105371899 Gene
No data available for Orthologs for LOC105371899 Gene
Paralogs for LOC105371899 Gene
No data available for Paralogs for LOC105371899 Gene
Variants for LOC105371899 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371899 Gene
Disorders for LOC105371899 Gene
Additional Disease Information for LOC105371899
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC105371899 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371899 Gene
Publications for LOC105371899 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3
- Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3
No data available for Mastermind for LOC105371899 Gene
Products for LOC105371899 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105371899
- Origene Custom Protein Services for LOC105371899
- Browse OriGene Inhibitory RNA Products For LOC105371899
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC105371899
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC105371899
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105371899
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC105371899
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC105371899
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC105371899
Sources for LOC105371899 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB