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Aliases for LOC105371899 Gene
Subcategory (RNA class) for LOC105371899 Gene
lncRNA
Number of RNA Genes sources:
2 / 17
External Ids for LOC105371899 Gene
- Entrez Gene: 105371899
Previous GeneCards Identifiers for LOC105371899 Gene
- GC17U902467
Summaries for LOC105371899 Gene
GeneCards Summary for LOC105371899 Gene
LOC105371899 (Uncharacterized LOC105371899) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105371899 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371899 Gene
Genomics for LOC105371899 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105371899 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076968 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE CraniofacialAtlas | 600.7 | -0.1 | -108 | 2.2 | PRDM10 ZNF629 ZIC2 POLR2A PATZ1 ZNF341 KLF9 RAD21 CTCF ZBTB48 | ENSG00000267568 ENSG00000280122 LOC105371899 EVPL MGAT5B SEC14L1 | |
| GH17J076957 | Enhancer | 0.6 | FANTOM5 Ensembl ENCODE | 0.4 | +11.2 | 11203 | 1.6 | ZIC2 | ENSG00000267521 AANAT MGAT5B LOC105371899 ENSG00000267568 HSALNG0118884 SEC14L1 | |
| GH17J076959 | Enhancer | 0.2 | Ensembl | 0.4 | +9.9 | 9903 | 0.6 | ENSG00000267521 ENSG00000267568 LOC105371899 MGAT5B SEC14L1 | ||
| GH17J076956 | Enhancer | 0.2 | Ensembl | 0.4 | +12.5 | 12503 | 0.6 | ENSG00000267521 LOC105371899 ENSG00000267568 HSALNG0118884 MGAT5B SEC14L1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105371899 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105371899 Gene
Genomic Locations for LOC105371899 Gene
- chr17:76,950,474-76,969,204
- (GRCh38/hg38)
- Size:
- 18,731 bases
- Orientation:
- Minus strand
Genomic View for LOC105371899 Gene
Genes around LOC105371899 on UCSC Golden Path with GeneCards custom track
LOC105371899 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.2 by Entrez Gene
LOC105371899 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105371899 Gene
Proteins for LOC105371899 Gene
Post-translational modifications for LOC105371899 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105371899
- Origene Custom Protein Services for LOC105371899
No data available for DME Specific Peptides for LOC105371899 Gene
Domains & Families for LOC105371899 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371899 Gene
Function for LOC105371899 Gene
Phenotypes From GWAS Catalog for LOC105371899 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371899 Gene
Localization for LOC105371899 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371899 Gene
Transcripts for LOC105371899 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371899 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A76978_9606 | lncRNA | 653 | 2 |
RefSeq: NR_136417, LNCipedia: lnc-SRSF2-2:10, |
| URS0000A776FD_9606 | lncRNA | 871 | 1 |
RefSeq: NR_136416, |
| URS0000D5750D_9606 | lncRNA | 658 | 2 |
LncBook: HSALNT0245526, LNCipedia: lnc-SRSF2-2:7, |
| URS0000D5CF03_9606 | lncRNA | 13326 | 1 |
LNCipedia: lnc-SRSF2-2:4, |
| URS0000D5DF52_9606 | lncRNA | 12765 | 1 |
LNCipedia: lnc-SRSF2-2:5, |
LOC105371899 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105371899 Gene
- 5 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105371899 Gene
- GeneLoc Exon Structure for
- LOC105371899
Expression for LOC105371899 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371899 Gene
Orthologs for LOC105371899 Gene
No data available for Orthologs and Evolution for LOC105371899 Gene
Paralogs for LOC105371899 Gene
No data available for Paralogs for LOC105371899 Gene
Variants for LOC105371899 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371899 Gene
Disorders for LOC105371899 Gene
No disorders were found for LOC105371899 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371899 Gene
Publications for LOC105371899 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3
- Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3
No data available for Mastermind for LOC105371899 Gene
Products for LOC105371899 Gene
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- Lentiviral ORF Clones
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Sources for LOC105371899 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB