LOC105371899 Gene (RNA Gene)

Uncharacterized LOC105371899

GC17M076954
GIFtS:
6

Aliases for LOC105371899 Gene

Subcategory (RNA class) for LOC105371899 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371899 Gene

  • Uncharacterized LOC105371899 3
  • HSALNG0118885 169
  • Lnc-SRSF2-2 170

External Ids for LOC105371899 Gene

Previous GeneCards Identifiers for LOC105371899 Gene

  • GC17U902467

Summaries for LOC105371899 Gene

GeneCards Summary for LOC105371899 Gene

LOC105371899 (Uncharacterized LOC105371899) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105371899 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371899 Gene

Genomics for LOC105371899 Gene

GeneHancer (GH) Regulatory Elements for LOC105371899 Gene

Promoters and enhancers for LOC105371899 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076968 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.1 -113 2.2 ZNF362 ZNF121 KLF14 GLIS2 ZIC2 ZBTB8A PRDM10 ZEB2 ZNF629 PATZ1 ENSG00000267568 ENSG00000280122 LOC105371899 EVPL
GH17J076957 Enhancer 0.6 FANTOM5 Ensembl ENCODE 0.4 +11.2 11198 1.6 ZIC2 ENSG00000267521 AANAT MGAT5B LOC105371899 HSALNG0118884 ENSG00000267568
GH17J076959 Enhancer 0.2 Ensembl 0.4 +9.9 9898 0.6 ENSG00000267521 ENSG00000267568 LOC105371899
GH17J076956 Enhancer 0.2 Ensembl 0.4 +12.5 12498 0.6 ENSG00000267521 LOC105371899 HSALNG0118884 ENSG00000267568
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371899 Gene

Genomic Locations for LOC105371899 Gene
chr17:76,950,474-76,969,199
(GRCh38/hg38)
Size:
18,726 bases
Orientation:
Minus strand

Genomic View for LOC105371899 Gene

Genes around LOC105371899 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371899 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371899 Gene

Proteins for LOC105371899 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371899 Gene

Domains & Families for LOC105371899 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371899 Gene

Function for LOC105371899 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105371899 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371899 Gene

Localization for LOC105371899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371899 Gene

Pathways & Interactions for LOC105371899 Gene

PathCards logo

SuperPathways for LOC105371899 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371899 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371899 Gene

Drugs & Compounds for LOC105371899 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371899 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105371899 Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(8) RNACentral transcripts :
(7) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371899 Gene

No ASD Table

Relevant External Links for LOC105371899 Gene

GeneLoc Exon Structure for
LOC105371899

Expression for LOC105371899 Gene

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  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371899 Gene

Orthologs for LOC105371899 Gene

No data available for Orthologs and Evolution for LOC105371899 Gene

Paralogs for LOC105371899 Gene

No data available for Paralogs for LOC105371899 Gene

Variants for LOC105371899 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC105371899 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000129588 -- 76,969,654(-) G/T upstream_transcript_variant
rs1000254038 -- 76,964,977(-) G/A intron_variant
rs1000278287 -- 76,950,140(-) A/C downstream_transcript_variant
rs1000564439 -- 76,968,982(-) A/G non_coding_transcript_variant
rs1000586570 -- 76,963,557(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371899 Gene

Disorders for LOC105371899 Gene

No disorders were found for LOC105371899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371899 Gene

Publications for LOC105371899 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3 56
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

No data available for External Links for LOC105371899 Gene

Products for LOC105371899 Gene

Sources for LOC105371899 Gene