Aliases for LOC105371899 Gene

Subcategory (RNA class) for LOC105371899 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC105371899 Gene

  • Uncharacterized LOC105371899 3
  • HSALNG0118885 164
  • Lnc-SRSF2-2 165

External Ids for LOC105371899 Gene

Previous GeneCards Identifiers for LOC105371899 Gene

  • GC17U902467

Summaries for LOC105371899 Gene

GeneCards Summary for LOC105371899 Gene

LOC105371899 (Uncharacterized LOC105371899) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105371899 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371899 Gene

Genomics for LOC105371899 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105371899 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076968 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.1 -108 2.2 PRDM10 ZNF629 ZIC2 POLR2A PATZ1 ZNF341 KLF9 RAD21 CTCF ZBTB48 ENSG00000267568 ENSG00000280122 LOC105371899 EVPL MGAT5B SEC14L1
GH17J076957 Enhancer 0.6 FANTOM5 Ensembl ENCODE 0.4 +11.2 11203 1.6 ZIC2 ENSG00000267521 AANAT MGAT5B LOC105371899 ENSG00000267568 HSALNG0118884 SEC14L1
GH17J076959 Enhancer 0.2 Ensembl 0.4 +9.9 9903 0.6 ENSG00000267521 ENSG00000267568 LOC105371899 MGAT5B SEC14L1
GH17J076956 Enhancer 0.2 Ensembl 0.4 +12.5 12503 0.6 ENSG00000267521 LOC105371899 ENSG00000267568 HSALNG0118884 MGAT5B SEC14L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371899 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105371899 Gene

Genomic Locations for LOC105371899 Gene
chr17:76,950,474-76,969,204
(GRCh38/hg38)
Size:
18,731 bases
Orientation:
Minus strand

Genomic View for LOC105371899 Gene

Genes around LOC105371899 on UCSC Golden Path with GeneCards custom track
LOC105371899 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105371899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371899 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371899 Gene

Proteins for LOC105371899 Gene

Post-translational modifications for LOC105371899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371899 Gene

Domains & Families for LOC105371899 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371899 Gene

Function for LOC105371899 Gene

Phenotypes From GWAS Catalog for LOC105371899 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371899 Gene

Localization for LOC105371899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371899 Gene

Pathways & Interactions for LOC105371899 Gene

PathCards logo

SuperPathways for LOC105371899 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371899 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105371899 Gene

Drugs & Compounds for LOC105371899 Gene

No Compound Related Data Available

Transcripts for LOC105371899 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371899 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76978_9606 lncRNA 653 2

RefSeq: NR_136417,

LNCipedia: lnc-SRSF2-2:10,

URS0000A776FD_9606 lncRNA 871 1

RefSeq: NR_136416,

URS0000D5750D_9606 lncRNA 658 2

LncBook: HSALNT0245526,

LNCipedia: lnc-SRSF2-2:7,

URS0000D5CF03_9606 lncRNA 13326 1

LNCipedia: lnc-SRSF2-2:4,

URS0000D5DF52_9606 lncRNA 12765 1

LNCipedia: lnc-SRSF2-2:5,

LOC105371899 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105371899 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371899 Gene

No ASD Table

Relevant External Links for LOC105371899 Gene

GeneLoc Exon Structure for
LOC105371899

Expression for LOC105371899 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371899 Gene

Orthologs for LOC105371899 Gene

No data available for Orthologs and Evolution for LOC105371899 Gene

Paralogs for LOC105371899 Gene

No data available for Paralogs for LOC105371899 Gene

Variants for LOC105371899 Gene

Additional dbSNP identifiers (rs#s) for LOC105371899 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371899 Gene

Disorders for LOC105371899 Gene

No disorders were found for LOC105371899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371899 Gene

Publications for LOC105371899 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC105371899 Gene

Products for LOC105371899 Gene

Sources for LOC105371899 Gene