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Aliases for LOC105371858 Gene

Subcategory (RNA class) for LOC105371858 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371858 Gene

  • Uncharacterized LOC105371858 3

External Ids for LOC105371858 Gene

Previous GeneCards Identifiers for LOC105371858 Gene

  • GC17U902276

Summaries for LOC105371858 Gene

GeneCards Summary for LOC105371858 Gene

LOC105371858 (Uncharacterized LOC105371858) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105371858 include Paramyotonia Congenita Of Von Eulenburg and Normokalemic Periodic Paralysis.

Additional gene information for LOC105371858 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371858 Gene

Genomics for LOC105371858 Gene

GeneHancer (GH) Regulatory Elements for LOC105371858 Gene

Promoters and enhancers for LOC105371858 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063959 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 600.7 +1.5 1519 5.6 AHR SP1 EGR1 HMG20B RXRA IKZF1 ZIC2 TARDBP CEBPA GATAD2A LOC105371858 FTSJ3 SMARCD2 DDX5 PLEKHM1P1 POLG2 DDX42 CEP95 ENSG00000265982 SLC16A6P1
GH17J063955 Enhancer 1 ENCODE dbSUPER 0.7 -4.0 -4000 1.8 CEBPG MYC ZNF644 KAT8 CREB1 CEBPA GATAD2A RXRB RCOR2 IRF2 FTSJ3 LOC105371858 GC17M063943 SCN4A
GH17J063953 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -6.6 -6598 2.8 MAFK IKZF1 GLIS2 PRDM10 IKZF2 PKNOX1 HES1 DPF2 ZKSCAN1 HDAC2 SCN4A GH1 CSHL1 FTSJ3 LOC105371858 GC17M063943
GH17J063949 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -10.2 -10227 1.3 ELF3 AHR RAD21 ZNF143 CTCF RUNX3 SMC3 XRCC5 HLF ERF FTSJ3 SCN4A GH1 CSHL1 GC17M063943 LOC105371858
GH17J063945 Enhancer 1 ENCODE dbSUPER 0.4 -14.0 -14026 1.4 CTCF AHR MLLT1 RAD21 IKZF1 CREB1 GLIS2 IKZF2 ZNF143 REST CSHL1 GH1 SCN4A FTSJ3 GC17M063943 LOC105371858
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371858 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371858 Gene

Genomic Locations for LOC105371858 Gene
chr17:63,960,599-63,966,573
(GRCh38/hg38)
Size:
5,975 bases
Orientation:
Plus strand

Genomic View for LOC105371858 Gene

Genes around LOC105371858 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371858 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371858 Gene

Proteins for LOC105371858 Gene

Post-translational modifications for LOC105371858 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371858 Gene

Domains & Families for LOC105371858 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371858 Gene

Function for LOC105371858 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371858 Gene

Localization for LOC105371858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371858 Gene

Pathways & Interactions for LOC105371858 Gene

PathCards logo

SuperPathways for LOC105371858 Gene

No Data Available

Interacting Proteins for LOC105371858 Gene

Gene Ontology (GO) - Biological Process for LOC105371858 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371858 Gene

Drugs & Compounds for LOC105371858 Gene

No Compound Related Data Available

Transcripts for LOC105371858 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371858 Gene

No ASD Table

Relevant External Links for LOC105371858 Gene

GeneLoc Exon Structure for
LOC105371858

No data available for mRNA/cDNA for LOC105371858 Gene

Expression for LOC105371858 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371858 Gene

Orthologs for LOC105371858 Gene

No data available for Orthologs and Evolution for LOC105371858 Gene

Paralogs for LOC105371858 Gene

No data available for Paralogs for LOC105371858 Gene

Variants for LOC105371858 Gene

Sequence variations from dbSNP and Humsavar for LOC105371858 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs111818485 likely-benign, benign, not specified, Hyperkalemic Periodic Paralysis Type 1 63,963,829(+) T/C intron_variant
rs1174261819 uncertain-significance, Hyperkalemic Periodic Paralysis Type 1 63,966,152(+) C/T intron_variant
rs121908552 uncertain-significance, likely-pathogenic, pathogenic, Muscle weakness, Myotonia, Myotonia congenita, Distal sensory impairment, EMG: myotonic discharges, Limb pain, Pain, not specified, Hyperkalemic Periodic Paralysis Type 1, Potassium aggravated myotonia, not provided 63,964,587(+) C/A/G/T non_coding_transcript_variant
rs121908556 pathogenic, Normokalemic periodic paralysis, potassium-sensitive, Hyperkalemic Periodic Paralysis Type 1 63,957,515(+) G/A/C upstream_transcript_variant
rs121908557 pathogenic, Normokalemic periodic paralysis, potassium-sensitive, Hyperkalemic Periodic Paralysis Type 1, not provided, Muscular Diseases 63,957,514(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371858 Gene

Disorders for LOC105371858 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LOC105371858 Gene - From: GeneCards

Disorder Aliases PubMed IDs
paramyotonia congenita of von eulenburg
  • pmc
normokalemic periodic paralysis
  • normokalemic pp
hypokalemic periodic paralysis, type 2
  • hokpp2
congenital myasthenic syndrome
  • congenital myasthenic syndromes
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371858: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371858 Gene

Publications for LOC105371858 Gene

No publications were found for LOC105371858 Gene.

No data available for External Links for LOC105371858 Gene

Products for LOC105371858 Gene

Sources for LOC105371858 Gene

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