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Aliases for LOC105371857 Gene

Subcategory (RNA class) for LOC105371857 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371857 Gene

  • Uncharacterized LOC105371857 3

External Ids for LOC105371857 Gene

Previous GeneCards Identifiers for LOC105371857 Gene

  • GC17U902245

Summaries for LOC105371857 Gene

GeneCards Summary for LOC105371857 Gene

LOC105371857 (Uncharacterized LOC105371857) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371857 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371857 Gene

Genomics for LOC105371857 Gene

GeneHancer (GH) Regulatory Elements for LOC105371857 Gene

Promoters and enhancers for LOC105371857 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063354 Enhancer 0.6 FANTOM5 Ensembl 600.7 +0.6 649 0.3 ZNF592 LOC105371857 ACE STRADA ENSG00000233635 TANC2
GH17J063356 Enhancer 0.2 Ensembl 600.7 -0.4 -425 0.8 LOC105371857 CYB561 GC17P063380 TANC2
GH17J063355 Enhancer 1 Ensembl ENCODE 0.7 -2.8 -2821 3.6 MAFK PKNOX1 POLR2A ZIC2 ZSCAN4 ZEB2 ZNF629 ZNF316 ZNF10 FOS CYB561 TCAM1P LOC105371857 GC17P063380 TANC2
GH17J063378 Enhancer 0.8 Ensembl 0.3 -24.2 -24225 0.8 CBFA2T2 MAFK TRIM24 ZNF639 SMARCA4 MTA1 POLR2A ZBTB33 HDAC1 HES1 GC17P063380 LOC105371857 TANC2
GH17J063380 Enhancer 0.8 Ensembl 0.3 -25.8 -25825 1.2 CBFA2T2 ZNF639 SMARCA4 MTA1 GMEB1 POLR2A DPF2 IKZF1 ATF1 PKNOX1 GC17P063380 LOC105371857 LOC105371856 TANC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371857 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371857 Gene

Genomic Locations for LOC105371857 Gene
chr17:63,320,175-63,354,776
(GRCh38/hg38)
Size:
34,602 bases
Orientation:
Minus strand

Genomic View for LOC105371857 Gene

Genes around LOC105371857 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371857 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371857 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371857 Gene

Proteins for LOC105371857 Gene

Post-translational modifications for LOC105371857 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371857 Gene

Domains & Families for LOC105371857 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371857 Gene

Function for LOC105371857 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371857 Gene

Localization for LOC105371857 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371857 Gene

Pathways & Interactions for LOC105371857 Gene

PathCards logo

SuperPathways for LOC105371857 Gene

No Data Available

Interacting Proteins for LOC105371857 Gene

Gene Ontology (GO) - Biological Process for LOC105371857 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371857 Gene

Drugs & Compounds for LOC105371857 Gene

No Compound Related Data Available

Transcripts for LOC105371857 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371857 Gene

No ASD Table

Relevant External Links for LOC105371857 Gene

GeneLoc Exon Structure for
LOC105371857

No data available for mRNA/cDNA for LOC105371857 Gene

Expression for LOC105371857 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371857 Gene

Orthologs for LOC105371857 Gene

No data available for Orthologs and Evolution for LOC105371857 Gene

Paralogs for LOC105371857 Gene

No data available for Paralogs for LOC105371857 Gene

Variants for LOC105371857 Gene

Sequence variations from dbSNP and Humsavar for LOC105371857 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000037321 -- 63,353,541(-) A/G intron_variant
rs1000169077 -- 63,333,809(-) GT/ non_coding_transcript_variant
rs1000320696 -- 63,334,186(-) T/G intron_variant
rs1000628002 -- 63,340,604(-) A/AA intron_variant
rs1000881683 -- 63,339,310(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371857 Gene

Disorders for LOC105371857 Gene

No disorders were found for LOC105371857 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371857 Gene

Publications for LOC105371857 Gene

No publications were found for LOC105371857 Gene.

No data available for External Links for LOC105371857 Gene

Products for LOC105371857 Gene

Sources for LOC105371857 Gene

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