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Aliases for LOC105371849 Gene

Subcategory (RNA class) for LOC105371849 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371849 Gene

  • Uncharacterized LOC105371849 3
  • Novel Transcript 5
  • CTD-2319I12.2 3
  • AC025048.4 5

External Ids for LOC105371849 Gene

Previous GeneCards Identifiers for LOC105371849 Gene

  • GC17U902453

Summaries for LOC105371849 Gene

GeneCards Summary for LOC105371849 Gene

LOC105371849 (Uncharacterized LOC105371849) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371849 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371849 Gene

Genomics for LOC105371849 Gene

GeneHancer (GH) Regulatory Elements for LOC105371849 Gene

Promoters and enhancers for LOC105371849 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060077 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +1.3 1263 6.9 ELF3 ZFX NKRF POLR2A MLLT1 GTF2F1 ZNF384 AHR MAFK TFE3 HEATR6 LOC105371849 TUBD1 APPBP2 PPM1D DHX40 RPS6KB1 WFDC21P
GH17J060089 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.1 12085 4.2 TRIM24 IKZF1 PKNOX1 IKZF2 ZNF561 SOX6 DPF2 EED MTA3 RUNX3 WFDC21P HEATR6 ENSG00000275860 APPBP2 RNFT1 LOC105371849
GH17J060086 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +8.4 8418 2.5 ZNF121 SP7 ZNF548 PRDM1 MZF1 ZBTB8A ZNF600 PRDM10 ZIC2 ZEB2 HEATR6 TUBD1 RPS6KB1 PPM1D DHX40 WFDC21P LOC105371849
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371849 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371849 Gene

Genomic Locations for LOC105371849 Gene
chr17:60,079,309-60,088,695
(GRCh38/hg38)
Size:
9,387 bases
Orientation:
Plus strand
chr17:58,156,670-58,166,056
(GRCh37/hg19)
Size:
9,387 bases
Orientation:
Plus strand

Genomic View for LOC105371849 Gene

Genes around LOC105371849 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371849 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371849 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371849 Gene

Proteins for LOC105371849 Gene

Post-translational modifications for LOC105371849 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371849 Gene

Domains & Families for LOC105371849 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371849 Gene

Function for LOC105371849 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371849 Gene

Localization for LOC105371849 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371849 Gene

Pathways & Interactions for LOC105371849 Gene

PathCards logo

SuperPathways for LOC105371849 Gene

No Data Available

Interacting Proteins for LOC105371849 Gene

Gene Ontology (GO) - Biological Process for LOC105371849 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371849 Gene

Drugs & Compounds for LOC105371849 Gene

No Compound Related Data Available

Transcripts for LOC105371849 Gene

mRNA/cDNA for LOC105371849 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371849 Gene

No ASD Table

Relevant External Links for LOC105371849 Gene

GeneLoc Exon Structure for
LOC105371849

Expression for LOC105371849 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371849 Gene

Orthologs for LOC105371849 Gene

Evolution for LOC105371849 Gene

ENSEMBL:
Gene Tree for LOC105371849 (if available)
TreeFam:
Gene Tree for LOC105371849 (if available)

No data available for Orthologs for LOC105371849 Gene

Paralogs for LOC105371849 Gene

No data available for Paralogs for LOC105371849 Gene

Variants for LOC105371849 Gene

Sequence variations from dbSNP and Humsavar for LOC105371849 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000217651 -- 60,081,628(+) C/G/T intron_variant
rs1000767040 -- 60,088,079(+) C/G intron_variant
rs1001549927 -- 60,080,666(+) A/G intron_variant
rs1001618989 -- 60,084,325(+) C/T intron_variant
rs1001890377 -- 60,079,819(+) A/C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371849 Gene

Disorders for LOC105371849 Gene

No disorders were found for LOC105371849 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371849 Gene

Publications for LOC105371849 Gene

No publications were found for LOC105371849 Gene.

No data available for External Links for LOC105371849 Gene

Products for LOC105371849 Gene

Sources for LOC105371849 Gene

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