LOC105371849 Gene (RNA Gene)

Uncharacterized LOC105371849

GC17P060082
GIFtS:
8
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Aliases for LOC105371849 Gene

Subcategory (RNA class) for LOC105371849 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105371849 Gene

  • Uncharacterized LOC105371849 3
  • Novel Transcript 5
  • NONHSAG022375.2 91
  • CTD-2319I12.2 3
  • HSALNG0117818 164
  • AC025048.4 5
  • Lnc-CA4-3 165

External Ids for LOC105371849 Gene

Previous GeneCards Identifiers for LOC105371849 Gene

  • GC17U902453
  • GC17P060080

Summaries for LOC105371849 Gene

GeneCards Summary for LOC105371849 Gene

LOC105371849 (Uncharacterized LOC105371849) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105371849 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371849 Gene

Genomics for LOC105371849 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105371849 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J060077 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.6 1598 6.9 HNRNPL PRDM10 TFE3 RFX1 IKZF1 POLR2A JUND FOXA1 GABPA PRDM1 HEATR6 LOC105371849 TUBD1 APPBP2 PPM1D DHX40 RPS6KB1 WFDC21P lnc-HEATR6-1 CA4
GH17J060086 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +8.8 8753 2.5 ATF7 TEAD4 PRDM10 ZNF629 PRDM1 ZIC2 PATZ1 ZNF600 ZNF341 ZNF561 HEATR6 TUBD1 RPS6KB1 PPM1D DHX40 WFDC21P lnc-HEATR6-1 LOC105371849 CA4
GH17J060089 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +12.4 12420 4.2 STAT3 PKNOX1 IKZF2 SOX6 ZNF561 EED DPF2 RELB MTA3 RUNX3 WFDC21P lnc-HEATR6-1 HEATR6 ENSG00000275860 APPBP2 RNFT1 LOC105371849 CA4
GH17J060093 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +15.8 15833 2 ATF7 EED ATF2 SPI1 IKZF1 HEATR6 RNFT1 lnc-HEATR6-1 LOC653653 LOC105371849 CA4
GH17J060090 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 +10.1 10127 0.2 ZFP91 VEZF1 HEATR6 WFDC21P lnc-HEATR6-1 LOC105371849 CA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371849 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105371849 Gene

Genomic Locations for LOC105371849 Gene
chr17:60,078,974-60,099,975
(GRCh38/hg38)
Size:
21,002 bases
Orientation:
Plus strand
chr17:58,156,670-58,166,056
(GRCh37/hg19)
Size:
9,387 bases
Orientation:
Plus strand

Genomic View for LOC105371849 Gene

Genes around LOC105371849 on UCSC Golden Path with GeneCards custom track
LOC105371849 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105371849 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371849 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371849 Gene

Proteins for LOC105371849 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371849 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371849 Gene

Domains & Families for LOC105371849 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371849 Gene

Function for LOC105371849 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371849 Gene

Localization for LOC105371849 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371849 Gene

Pathways & Interactions for LOC105371849 Gene

PathCards logo

SuperPathways for LOC105371849 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371849 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105371849 Gene

Drugs & Compounds for LOC105371849 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371849 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371849 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005EAB57_9606 lncRNA 699 4

Ensembl: ENST00000589740 (view in UCSC) ,

LncBook: HSALNT0243345,

LNCipedia: lnc-CA4-3:1,

NONCODE: NONHSAT055059.2,

URS0000A76B7C_9606 lncRNA 696 1

RefSeq: NR_135648,

URS0000D5B2E8_9606 lncRNA 448 2

LncBook: HSALNT0243364,

LNCipedia: lnc-CA4-3:8,

URS0000D5D0DF_9606 lncRNA 12314 1

LNCipedia: lnc-CA4-3:7,

URS0000D59C1F_9606 lncRNA 4746 1

LNCipedia: lnc-CA4-3:4,

LOC105371849 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105371849 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371849 Gene

No ASD Table

Relevant External Links for LOC105371849 Gene

GeneLoc Exon Structure for
LOC105371849

Expression for LOC105371849 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371849 Gene

Orthologs for LOC105371849 Gene

Evolution for LOC105371849 Gene

ENSEMBL:
Gene Tree for LOC105371849 (if available)
TreeFam:
Gene Tree for LOC105371849 (if available)

No data available for Orthologs for LOC105371849 Gene

Paralogs for LOC105371849 Gene

No data available for Paralogs for LOC105371849 Gene

Variants for LOC105371849 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC105371849 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371849 Gene

Disorders for LOC105371849 Gene

Additional Disease Information for LOC105371849

Open Targets Platform

No disorders were found for LOC105371849 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371849 Gene

Publications for LOC105371849 Gene

No publications were found for LOC105371849 Gene.

No data available for Mastermind for LOC105371849 Gene

Products for LOC105371849 Gene

Sources for LOC105371849 Gene