Aliases for LOC105371843 Gene

Subcategory (RNA class) for LOC105371843 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371843 Gene

  • Uncharacterized LOC105371843 3

External Ids for LOC105371843 Gene

Previous GeneCards Identifiers for LOC105371843 Gene

  • GC17U902193

Summaries for LOC105371843 Gene

GeneCards Summary for LOC105371843 Gene

LOC105371843 (Uncharacterized LOC105371843) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105371843 include Breast-Ovarian Cancer, Familial 3.

Additional gene information for LOC105371843 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371843 Gene

Genomics for LOC105371843 Gene

GeneHancer (GH) Regulatory Elements for LOC105371843 Gene

Promoters and enhancers for LOC105371843 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058755 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.5 -495 2.8 ZBTB6 USF2 L3MBTL2 TEAD4 ZKSCAN8 ZNF148 NKRF CSDE1 NCOA6 ZSCAN21 LOC105371843 PPM1E TRIM37 SRSF1 ENSG00000264112 DHX40 MKS1 RAD51C ENSG00000276601
GH17J058740 Enhancer 1 Ensembl ENCODE 0.4 +14.9 14851 1.1 GATA3 TCF7L2 ZNF217 L3MBTL2 RAD21 SP1 CEBPG MYC TRIM24 KAT8 ENSG00000274198 LOC105371843 HSALNG0117731
GH17J058760 Enhancer 0.5 Ensembl 0.6 -4.5 -4496 0.4 PRDM1 ZNF692 JUNB ZFP69B CBX8 LOC105371843 PPM1E ENSG00000276601
GH17J058734 Enhancer 0.5 Ensembl 0.3 +21.2 21204 0.2 MAFK CEBPG NFE2L2 ZNF316 NFE2 MAFG EMSY PPM1E ENSG00000274198 LOC105371843 HSALNG0117731 RAD51C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371843 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371843 Gene

Genomic Locations for LOC105371843 Gene
chr17:58,724,111-58,756,105
(GRCh38/hg38)
Size:
31,995 bases
Orientation:
Minus strand

Genomic View for LOC105371843 Gene

Genes around LOC105371843 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371843 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371843 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371843 Gene

Proteins for LOC105371843 Gene

Post-translational modifications for LOC105371843 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371843 Gene

Domains & Families for LOC105371843 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371843 Gene

Function for LOC105371843 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371843 Gene

Localization for LOC105371843 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371843 Gene

Pathways & Interactions for LOC105371843 Gene

PathCards logo

SuperPathways for LOC105371843 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371843 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371843 Gene

Drugs & Compounds for LOC105371843 Gene

No Compound Related Data Available

Transcripts for LOC105371843 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371843 Gene

No ASD Table

Relevant External Links for LOC105371843 Gene

GeneLoc Exon Structure for
LOC105371843

No data available for mRNA/cDNA for LOC105371843 Gene

Expression for LOC105371843 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371843 Gene

Orthologs for LOC105371843 Gene

No data available for Orthologs and Evolution for LOC105371843 Gene

Paralogs for LOC105371843 Gene

No data available for Paralogs for LOC105371843 Gene

Variants for LOC105371843 Gene

Sequence variations from dbSNP and Humsavar for LOC105371843 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1057521598 likely-benign, Hereditary cancer-predisposing syndrome, Fanconi anemia, complementation group O, not specified 58,732,526(-) A/G/T intron_variant
rs1057522948 likely-benign, not specified, Hereditary cancer-predisposing syndrome 58,732,472(-) T/C intron_variant
rs1060502590 uncertain-significance, Fanconi anemia, complementation group O 58,734,151(-) G/A intron_variant
rs1060502602 uncertain-significance, Fanconi anemia, complementation group O, Hereditary cancer-predisposing syndrome 58,732,534(-) T/C intron_variant
rs1064792966 likely-pathogenic, uncertain-significance, Fanconi anemia, complementation group O, Hereditary cancer-predisposing syndrome 58,734,147(-) TTCTGCATGTT/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371843 Gene

Disorders for LOC105371843 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371843 Gene - From: GeneCards

Disorder Aliases PubMed IDs
breast-ovarian cancer, familial 3
  • breast-ovarian cancer, familial, susceptibility to, 3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371843: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371843 Gene

Publications for LOC105371843 Gene

No publications were found for LOC105371843 Gene.

No data available for External Links for LOC105371843 Gene

Products for LOC105371843 Gene

Sources for LOC105371843 Gene