Aliases for LOC105371840 Gene
Subcategory (RNA class) for LOC105371840 Gene
ncRNA
Quality Score for this RNA gene is
13
Aliases for LOC105371840 Gene
- Uncharacterized LOC105371840 3
External Ids for LOC105371840 Gene
- Entrez Gene: 105371840
Previous GeneCards Identifiers for LOC105371840 Gene
- GC17U902414
Summaries for LOC105371840 Gene
GeneCards Summary for LOC105371840 Gene
LOC105371840 (Uncharacterized LOC105371840) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC105371840 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371840 Gene
Genomics for LOC105371840 Gene
GeneHancer (GH) Regulatory Elements for LOC105371840 Gene
Promoters and enhancers for LOC105371840 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J058060 | Enhancer | 0.7 | FANTOM5 Ensembl | 600.7 | -0.9 | -857 | 1.6 | ZBTB17 ZFHX2 EGR2 | ENSG00000285930 LOC105371840 SRSF1 OR4D1 MSX2P1 EPX LOC101927666 GC17M057928 | |
| GH17J058051 | Enhancer | 0.6 | Ensembl | 0.4 | +7.7 | 7743 | 2 | PRDM1 HDGF CREB1 ATF7 ZNF629 MNT ATF2 POLR2A ZFHX2 CEBPG | DYNLL2 EPX SRSF1 OR4D1 MSX2P1 ENSG00000285930 LOC105371840 PIR35824 GC17M057928 | |
| GH17J058022 | Enhancer | 0.9 | Ensembl ENCODE | 0.3 | +36.8 | 36810 | 1.1 | SP1 NFIB FOSL2 CREB1 GATAD2B TARDBP CTBP1 ZKSCAN1 PKNOX1 ZNF217 | PIR35824 LOC105371840 GC17M057928 | |
| GH17J058032 | Enhancer | 0.7 | Ensembl ENCODE | 0.3 | +26.7 | 26743 | 1.6 | POLR2A ZNF248 CEBPB NFATC1 | SRSF1 DYNLL2 LOC101927666 PIR35824 LOC105371840 GC17M057928 | |
| GH17J058043 | Enhancer | 0.5 | Ensembl | 0.4 | +14.3 | 14344 | 4.4 | SP1 ZSCAN5C HNF4A ZMYM3 | DYNLL2 EPX SRSF1 OR4D1 MSX2P1 LOC101927666 LOC105371840 PIR35824 GC17M057928 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105371840 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC105371840 Gene
Genomic Locations for LOC105371840 Gene
- chr17:58,045,800-58,059,944
- (GRCh38/hg38)
- Size:
- 14,145 bases
- Orientation:
- Minus strand
Genomic View for LOC105371840 Gene
Genes around LOC105371840 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q22 by Entrez Gene
LOC105371840 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105371840 Gene
Proteins for LOC105371840 Gene
Post-translational modifications for LOC105371840 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105371840
- Origene Custom Protein Services for LOC105371840
No data available for DME Specific Peptides for LOC105371840 Gene
Domains & Families for LOC105371840 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371840 Gene
Function for LOC105371840 Gene
Phenotypes From GWAS Catalog for LOC105371840 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC105371840
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371840 Gene
Localization for LOC105371840 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371840 Gene
Transcripts for LOC105371840 Gene
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105371840 Gene
- GeneLoc Exon Structure for
- LOC105371840
No data available for mRNA/cDNA for LOC105371840 Gene
Expression for LOC105371840 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371840 Gene
Orthologs for LOC105371840 Gene
No data available for Orthologs and Evolution for LOC105371840 Gene
Paralogs for LOC105371840 Gene
No data available for Paralogs for LOC105371840 Gene
Variants for LOC105371840 Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000063838 | -- | 58,059,483(-) | G/A | non_coding_transcript_variant | |
| rs1000518523 | -- | 58,059,719(-) | T/G | non_coding_transcript_variant | |
| rs1000536868 | -- | 58,055,946(-) | G/A | intron_variant | |
| rs1000841803 | -- | 58,051,525(-) | T/C | non_coding_transcript_variant | |
| rs1000912985 | -- | 58,055,661(-) | G/A | intron_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371840 Gene
Disorders for LOC105371840 Gene
No disorders were found for LOC105371840 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371840 Gene
Publications for LOC105371840 Gene
No publications were found for LOC105371840 Gene.
No data available for External Links for LOC105371840 Gene
Products for LOC105371840 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105371840
- Origene Custom Protein Services for LOC105371840
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC105371840
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC105371840
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC105371840
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105371840
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC105371840
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC105371840
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC105371840
Sources for LOC105371840 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind