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Aliases for LOC105371839 Gene

Subcategory (RNA class) for LOC105371839 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371839 Gene

  • Uncharacterized LOC105371839 3

External Ids for LOC105371839 Gene

Previous GeneCards Identifiers for LOC105371839 Gene

  • GC17U902446

Summaries for LOC105371839 Gene

GeneCards Summary for LOC105371839 Gene

LOC105371839 (Uncharacterized LOC105371839) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371839 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371839 Gene

Genomics for LOC105371839 Gene

GeneHancer (GH) Regulatory Elements for LOC105371839 Gene

Promoters and enhancers for LOC105371839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J057834 Enhancer 0.9 ENCODE dbSUPER 600.7 +1.4 1420 0.2 CREB1 CTCF HES1 ZNF512B ZKSCAN1 ESRRA ZNF207 NONO DPF2 GATAD2B ENSG00000265542 LOC105371839 SRSF1 ENSG00000262298 CCDC182 MKS1 DYNLL2 AKAP1 CUEDC1 OR4D1
GH17J057836 Enhancer 0.8 ENCODE dbSUPER 600.7 +0.5 480 0.2 NCOA3 PRDM1 ZNF644 HDGF CREB1 RFX1 CTBP1 HES1 ZNF512B BMI1 ENSG00000265542 LOC105371839 CCDC182 DYNLL2 AKAP1 SRSF1 CUEDC1 OR4D1 MSX2P1 MRPS23
GH17J057835 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.7 -1706 1 LOC105371839 CUEDC1 SRSF1 MRPS23
GH17J057832 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.7 +2.8 2763 2.2 CC2D1A ELF3 CTCF NCOA3 MYC SP7 RAD21 HDGF CREB1 ZBTB8A ENSG00000265542 SRSF1 ENSG00000262298 CCDC182 MKS1 DYNLL2 AKAP1 CUEDC1 OR4D1 MSX2P1
GH17J057838 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 -3.3 -3256 1.8 ZNF652 ELF3 MNT CEBPG RERE TFE3 SP1 HNF1A PPARG ZNF644 CUEDC1 SRSF1 MRPS23 LOC105371839
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371839 Gene

Genomic Locations for LOC105371839 Gene
chr17:57,771,781-57,835,995
(GRCh38/hg38)
Size:
64,215 bases
Orientation:
Minus strand

Genomic View for LOC105371839 Gene

Genes around LOC105371839 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371839 Gene

Proteins for LOC105371839 Gene

Post-translational modifications for LOC105371839 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371839 Gene

Domains & Families for LOC105371839 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371839 Gene

Function for LOC105371839 Gene

Phenotypes From GWAS Catalog for LOC105371839 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371839 Gene

Localization for LOC105371839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371839 Gene

Pathways & Interactions for LOC105371839 Gene

PathCards logo

SuperPathways for LOC105371839 Gene

No Data Available

Interacting Proteins for LOC105371839 Gene

Gene Ontology (GO) - Biological Process for LOC105371839 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371839 Gene

Drugs & Compounds for LOC105371839 Gene

No Compound Related Data Available

Transcripts for LOC105371839 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371839 Gene

No ASD Table

Relevant External Links for LOC105371839 Gene

GeneLoc Exon Structure for
LOC105371839

No data available for mRNA/cDNA for LOC105371839 Gene

Expression for LOC105371839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371839 Gene

Orthologs for LOC105371839 Gene

No data available for Orthologs and Evolution for LOC105371839 Gene

Paralogs for LOC105371839 Gene

No data available for Paralogs for LOC105371839 Gene

Variants for LOC105371839 Gene

Sequence variations from dbSNP and Humsavar for LOC105371839 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000082290 -- 57,798,705(-) T/C intron_variant
rs1000103899 -- 57,838,411(-) C/A upstream_transcript_variant
rs1000106543 -- 57,773,317(-) G/A intron_variant
rs1000124894 -- 57,798,153(-) G/A intron_variant
rs1000188280 -- 57,820,853(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371839 Gene

Disorders for LOC105371839 Gene

No disorders were found for LOC105371839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371839 Gene

Publications for LOC105371839 Gene

No publications were found for LOC105371839 Gene.

No data available for External Links for LOC105371839 Gene

Products for LOC105371839 Gene

Sources for LOC105371839 Gene

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