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Aliases for LOC105371824 Gene

Subcategory (RNA class) for LOC105371824 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105371824 Gene

  • Uncharacterized LOC105371824 3
  • AC021491.2 5

External Ids for LOC105371824 Gene

Previous GeneCards Identifiers for LOC105371824 Gene

  • GC17U902349

Summaries for LOC105371824 Gene

GeneCards Summary for LOC105371824 Gene

LOC105371824 (Uncharacterized LOC105371824) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371824 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371824 Gene

Genomics for LOC105371824 Gene

GeneHancer (GH) Regulatory Elements for LOC105371824 Gene

Promoters and enhancers for LOC105371824 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I050537 Enhancer 0.9 ENCODE dbSUPER 550.8 +0.3 260 1.2 DRAP1 TFAP4 SAP130 ARID4B DMAP1 ZNF48 TEAD3 POLR2A NR2F6 ZNF600 LOC105371824 SPATA20 EPN3
GH17I050536 Enhancer 0.4 dbSUPER 550.8 +2.0 1960 0.9 ZNF664 ZMYM3 ZBTB33 LOC105371824 EPN3 SPATA20
GH17I050395 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 31.6 +141.9 141944 2.7 CLOCK MLX DMAP1 IRF4 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ENSG00000253102 LRRC59 ENSG00000262837 MBTD1 LOC105371824 LUC7L3 CACNA1G-AS1 UTP18 FLJ45513 FAM117A
GH17I051152 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 18.7 -614.9 -614925 2.9 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 NME1 NME1-NME2 MBTD1 LUC7L3 UTP18 COL1A1 EME1 NME2 LOC105371824 CACNA1G-AS1
GH17I050171 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 +346.2 346232 42 CLOCK DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D COL1A1 SGCA ENSG00000262837 LUC7L3 TMEM92-AS1 TMEM92 XYLT2 ZNF652 PPP1R9B FLJ45513
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105371824 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371824 Gene

Genomic Locations for LOC105371824 Gene
chr17:50,537,294-50,538,754
(GRCh38/hg38)
Size:
1,461 bases
Orientation:
Minus strand
chr17:48,614,655-48,616,115
(GRCh37/hg19)

Genomic View for LOC105371824 Gene

Genes around LOC105371824 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371824 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371824 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371824 Gene

Proteins for LOC105371824 Gene

Post-translational modifications for LOC105371824 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371824 Gene

Domains & Families for LOC105371824 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371824 Gene

Function for LOC105371824 Gene

Phenotypes From GWAS Catalog for LOC105371824 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371824 Gene

Localization for LOC105371824 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371824 Gene

Pathways & Interactions for LOC105371824 Gene

SuperPathways for LOC105371824 Gene

No Data Available

Interacting Proteins for LOC105371824 Gene

Gene Ontology (GO) - Biological Process for LOC105371824 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371824 Gene

Drugs & Compounds for LOC105371824 Gene

No Compound Related Data Available

Transcripts for LOC105371824 Gene

mRNA/cDNA for LOC105371824 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371824 Gene

No ASD Table

Relevant External Links for LOC105371824 Gene

GeneLoc Exon Structure for
LOC105371824

Expression for LOC105371824 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371824 Gene

Orthologs for LOC105371824 Gene

Evolution for LOC105371824 Gene

ENSEMBL:
Gene Tree for LOC105371824 (if available)
TreeFam:
Gene Tree for LOC105371824 (if available)

No data available for Orthologs for LOC105371824 Gene

Paralogs for LOC105371824 Gene

No data available for Paralogs for LOC105371824 Gene

Variants for LOC105371824 Gene

Sequence variations from dbSNP and Humsavar for LOC105371824 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000111981 -- 50,537,898(-) T/C intron_variant
rs1000897065 -- 50,538,085(-) C/A/T non_coding_transcript_variant
rs1002239869 -- 50,537,555(-) A/T intron_variant
rs1002352902 -- 50,537,803(-) G/A intron_variant
rs1002799904 -- 50,540,221(-) GCCGCGGC/GC upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371824 Gene

Disorders for LOC105371824 Gene

Additional Disease Information for LOC105371824

No disorders were found for LOC105371824 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371824 Gene

Publications for LOC105371824 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC105371824 Gene

Sources for LOC105371824 Gene

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