LOC105371701 Gene (RNA Gene)

Uncharacterized LOC105371701

GC01P205680
GIFtS:
4

Aliases for LOC105371701 Gene

Subcategory (RNA class) for LOC105371701 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371701 Gene

  • Uncharacterized LOC105371701 3

External Ids for LOC105371701 Gene

Previous GeneCards Identifiers for LOC105371701 Gene

  • GC01U904621

Summaries for LOC105371701 Gene

GeneCards Summary for LOC105371701 Gene

LOC105371701 (Uncharacterized LOC105371701) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371701 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371701 Gene

Genomics for LOC105371701 Gene

GeneHancer (GH) Regulatory Elements for LOC105371701 Gene

Promoters and enhancers for LOC105371701 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J205681 Promoter/Enhancer 0.9 Ensembl dbSUPER 750.6 +0.9 886 0.2 PRDM1 ZBTB33 TARDBP CTBP1 SMARCA5 FOXA2 DPF2 FOS ZBTB7B LOC105371701 SLC45A3 ENSG00000275213 lnc-SLC45A3-1
GH01J205674 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -2.6 -2550 6.3 ZBTB40 FOXA1 SMARCE1 POLR2A NR2F6 CREB1 RUNX1 CC2D1A HLF L3MBTL2 SLC45A3 PM20D1 RBBP5 RAB29 EIF2D TMCC2 CDK18 MFSD4A DSTYK LOC105371701
GH01J205667 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -10.1 -10066 4.8 CTCF CC2D1A ETV6 RELA L3MBTL2 RAD21 MAX TEAD4 SP1 NKRF SLC45A3 RAB29 RNU6-418P NUCKS1 ELK4 LOC100420878 MFSD4A CDK18 PM20D1 LOC105371701
GH01J205663 Enhancer 1 ENCODE dbSUPER 0.4 -14.7 -14717 3.4 RAD21 ZNF121 MNT ELF3 SP1 PPARG RELA FOSL2 IKZF1 CREB1 RAB29 RNU6-418P NUCKS1 ELK4 LOC100420878 MFSD4A CDK18 SLC45A3 LOC105371701
GH01J205661 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -20.7 -20714 1.8 CTCF CC2D1A RAD21 ZNF148 ZNF384 KLF14 GLIS2 ZIC2 ARID2 REST LOC105371701 SLC45A3 ELK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371701 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371701 Gene

Genomic Locations for LOC105371701 Gene
chr1:205,680,415-205,690,644
(GRCh38/hg38)
Size:
10,230 bases
Orientation:
Plus strand

Genomic View for LOC105371701 Gene

Genes around LOC105371701 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371701 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371701 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371701 Gene

Proteins for LOC105371701 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371701 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371701 Gene

Domains & Families for LOC105371701 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371701 Gene

Function for LOC105371701 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105371701 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371701 Gene

Localization for LOC105371701 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371701 Gene

Pathways & Interactions for LOC105371701 Gene

PathCards logo

SuperPathways for LOC105371701 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371701 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371701 Gene

Drugs & Compounds for LOC105371701 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371701 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371701 Gene

No ASD Table

Relevant External Links for LOC105371701 Gene

GeneLoc Exon Structure for
LOC105371701

No data available for mRNA/cDNA for LOC105371701 Gene

Expression for LOC105371701 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371701 Gene

Orthologs for LOC105371701 Gene

No data available for Orthologs and Evolution for LOC105371701 Gene

Paralogs for LOC105371701 Gene

No data available for Paralogs for LOC105371701 Gene

Variants for LOC105371701 Gene

Sequence variations from dbSNP and Humsavar for LOC105371701 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000396319 -- 205,684,970(+) A/C intron_variant
rs1000465648 -- 205,678,564(+) C/T upstream_transcript_variant
rs1000557988 -- 205,680,470(+) C/T genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000734515 -- 205,686,342(+) T/A intron_variant
rs1000744506 -- 205,686,702(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371701 Gene

Disorders for LOC105371701 Gene

No disorders were found for LOC105371701 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371701 Gene

Publications for LOC105371701 Gene

No publications were found for LOC105371701 Gene.

No data available for External Links for LOC105371701 Gene

Products for LOC105371701 Gene

Sources for LOC105371701 Gene