Aliases for LOC105371688 Gene

Subcategory (RNA class) for LOC105371688 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371688 Gene

  • Uncharacterized LOC105371688 3

External Ids for LOC105371688 Gene

Previous GeneCards Identifiers for LOC105371688 Gene

  • GC01U904964

Summaries for LOC105371688 Gene

GeneCards Summary for LOC105371688 Gene

LOC105371688 (Uncharacterized LOC105371688) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371688 Gene

Genomics for LOC105371688 Gene

GeneHancer (GH) Regulatory Elements for LOC105371688 Gene

Promoters and enhancers for LOC105371688 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J203511 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 750.6 +0.5 541 3.6 SIN3A SMARCE1 POLR2A MYC L3MBTL2 MAX MNT NCOA3 SP7 PRDM1 HSALNG0009804 LOC105371688 lnc-OPTC-2 ATP2B4 PRELP BTG2
GH01J203519 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -7.1 -7111 3.7 SREBF1 TCF7L2 ZNF217 POU5F1 TEAD4 SP1 NCOA3 CBFA2T2 SMARCA4 FOSL2 lnc-OPTC-1 OPTC PRELP ATP2B4 ENSG00000229652 FMOD BTG2 SNRPE PPFIA4 LOC105371688
GH01J203518 Enhancer 0.3 CraniofacialAtlas 0.6 -3.2 -3202 0.2 ZFHX2 ATP2B4 LOC105371688 lnc-OPTC-2 lnc-OPTC-1
GH01J203520 Enhancer 0.3 CraniofacialAtlas 0.6 -3.8 -3802 0.6 ZFHX2 PRELP ATP2B4 LOC105371688 lnc-OPTC-1 lnc-OPTC-2
GH01J203517 Enhancer 0.2 CraniofacialAtlas 0.6 -2.6 -2602 0.2 ATP2B4 LOC105371688 lnc-OPTC-2 lnc-OPTC-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371688 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371688 Gene

Genomic Locations for LOC105371688 Gene
chr1:203,510,493-203,513,771
(GRCh38/hg38)
Size:
3,279 bases
Orientation:
Minus strand

Genomic View for LOC105371688 Gene

Genes around LOC105371688 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371688 Gene

Proteins for LOC105371688 Gene

Post-translational modifications for LOC105371688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371688 Gene

Domains & Families for LOC105371688 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371688 Gene

Function for LOC105371688 Gene

Phenotypes From GWAS Catalog for LOC105371688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371688 Gene

Localization for LOC105371688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371688 Gene

Pathways & Interactions for LOC105371688 Gene

PathCards logo

SuperPathways for LOC105371688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371688 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371688 Gene

Drugs & Compounds for LOC105371688 Gene

No Compound Related Data Available

Transcripts for LOC105371688 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371688 Gene

No ASD Table

Relevant External Links for LOC105371688 Gene

GeneLoc Exon Structure for
LOC105371688

No data available for mRNA/cDNA for LOC105371688 Gene

Expression for LOC105371688 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371688 Gene

Orthologs for LOC105371688 Gene

No data available for Orthologs and Evolution for LOC105371688 Gene

Paralogs for LOC105371688 Gene

No data available for Paralogs for LOC105371688 Gene

Variants for LOC105371688 Gene

Sequence variations from dbSNP and Humsavar for LOC105371688 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000191026 -- 203,508,414(-) G/A intron_variant
rs1000297824 -- 203,511,154(-) G/A intron_variant
rs1000304863 -- 203,511,821(-) G/A intron_variant
rs1000356924 -- 203,511,534(-) C/T intron_variant
rs1000428075 -- 203,505,949(-) AGAG/AG intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371688 Gene

Disorders for LOC105371688 Gene

No disorders were found for LOC105371688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371688 Gene

Publications for LOC105371688 Gene

No publications were found for LOC105371688 Gene.

No data available for External Links for LOC105371688 Gene

Products for LOC105371688 Gene

Sources for LOC105371688 Gene