Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371686 Gene

Subcategory (RNA class) for LOC105371686 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371686 Gene

  • Uncharacterized LOC105371686 3

External Ids for LOC105371686 Gene

Previous GeneCards Identifiers for LOC105371686 Gene

  • GC01U905019

Summaries for LOC105371686 Gene

GeneCards Summary for LOC105371686 Gene

LOC105371686 (Uncharacterized LOC105371686) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105371686 include Myasthenic Syndrome, Congenital, 7, Presynaptic.

Additional gene information for LOC105371686 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371686 Gene

Genomics for LOC105371686 Gene

GeneHancer (GH) Regulatory Elements for LOC105371686 Gene

Promoters and enhancers for LOC105371686 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J202595 Enhancer 0.7 Ensembl dbSUPER 600.7 +0.1 124 1.4 TARDBP ZSCAN4 MCM3 EHMT2 ZBTB7B LOC105371686 RNPEP ENSG00000236439 LMOD1 FMOD PRELP KDM5B ENSG00000226862 SYT2
GH01J202599 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +3.5 3453 0.9 CC2D1A CTCF RAD21 EGR1 PKNOX1 ARID2 PRDM10 ZNF143 REST TRIM22 LMOD1 PRELP FMOD LOC105371686 ENSG00000226862 SYT2
GH01J202584 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -7.7 -7697 11 ELF3 MLLT1 NFIB ZSCAN21 NCOA3 SP7 SP1 PRDM1 SMARCA4 KAT8 GC01P202609 PIR55395 LOC105371686 PIR54013 SYT2 PPP1R12B
GH01J202602 Enhancer 0.2 dbSUPER 0.4 +6.2 6236 1.8 ENSG00000226862 LOC105371686 SYT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371686 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371686 Gene

Genomic Locations for LOC105371686 Gene
chr1:202,596,977-202,602,000
(GRCh38/hg38)
Size:
5,024 bases
Orientation:
Plus strand

Genomic View for LOC105371686 Gene

Genes around LOC105371686 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371686 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371686 Gene

Proteins for LOC105371686 Gene

Post-translational modifications for LOC105371686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371686 Gene

Domains & Families for LOC105371686 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371686 Gene

Function for LOC105371686 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371686 Gene

Localization for LOC105371686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371686 Gene

Pathways & Interactions for LOC105371686 Gene

PathCards logo

SuperPathways for LOC105371686 Gene

No Data Available

Interacting Proteins for LOC105371686 Gene

Gene Ontology (GO) - Biological Process for LOC105371686 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371686 Gene

Drugs & Compounds for LOC105371686 Gene

No Compound Related Data Available

Transcripts for LOC105371686 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371686 Gene

No ASD Table

Relevant External Links for LOC105371686 Gene

GeneLoc Exon Structure for
LOC105371686

No data available for mRNA/cDNA for LOC105371686 Gene

Expression for LOC105371686 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371686 Gene

Orthologs for LOC105371686 Gene

No data available for Orthologs and Evolution for LOC105371686 Gene

Paralogs for LOC105371686 Gene

No data available for Paralogs for LOC105371686 Gene

Variants for LOC105371686 Gene

Sequence variations from dbSNP and Humsavar for LOC105371686 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1057518805 likely-pathogenic, Muscle weakness, Respiratory distress 202,596,928(+) GTCATAGTC/GTC upstream_transcript_variant
rs587777781 pathogenic, Myasthenic syndrome, congenital, 7, presynaptic 202,599,351(+) T/G non_coding_transcript_variant
rs587777782 pathogenic, Myasthenic syndrome, congenital, 7, presynaptic 202,599,348(+) G/A non_coding_transcript_variant
rs55968420 likely-benign, not provided 202,602,978(+) CCCCCCC/CCCCC/CCCCCC/CCCCCCCC/CCCCCCCCC intron_variant
rs780359132 uncertain-significance, not provided 202,600,373(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371686 Gene

Disorders for LOC105371686 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371686 Gene - From: GeneCards

Disorder Aliases PubMed IDs
myasthenic syndrome, congenital, 7, presynaptic
  • cms7
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371686: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371686 Gene

Publications for LOC105371686 Gene

No publications were found for LOC105371686 Gene.

No data available for External Links for LOC105371686 Gene

Products for LOC105371686 Gene

Sources for LOC105371686 Gene

Content
Loading form....