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Aliases for LOC105371680 Gene

Subcategory (RNA class) for LOC105371680 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371680 Gene

  • Uncharacterized LOC105371680 3

External Ids for LOC105371680 Gene

Previous GeneCards Identifiers for LOC105371680 Gene

  • GC01U904951

Summaries for LOC105371680 Gene

GeneCards Summary for LOC105371680 Gene

LOC105371680 (Uncharacterized LOC105371680) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371680 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371680 Gene

Genomics for LOC105371680 Gene

GeneHancer (GH) Regulatory Elements for LOC105371680 Gene

Promoters and enhancers for LOC105371680 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J199448 Enhancer 0.4 ENCODE 600.7 -0.2 -198 0.2 SP1 HNF4G HNF4A LOC105371680 LOC100421840
GH01J199434 Enhancer 0.5 Ensembl 0.4 -14.4 -14422 1 ZNF384 PKNOX1 POLR2A JUNB BATF JUN MAX LOC105371680 LOC100421840
GH01J199488 Enhancer 0.8 Ensembl 0.3 +41.4 41414 3.2 POLR2A ZNF501 BRCA1 CEBPB SCRT2 ZBTB44 JUN RCOR1 JUND MAX LOC105371680 ENSG00000231984
GH01J199399 Enhancer 0.8 Ensembl ENCODE 0.3 -49.2 -49186 4 IKZF1 IKZF2 DPF2 RUNX3 IRF4 ATF2 ZNF217 ETV6 LOC100421840 LOC105371680
GH01J199403 Enhancer 0.6 Ensembl ENCODE 0.3 -45.4 -45385 2.4 USF1 USF2 LOC100421840 LOC105371680
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371680 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371680 Gene

Genomic Locations for LOC105371680 Gene
chr1:199,448,986-199,460,401
(GRCh38/hg38)
Size:
11,416 bases
Orientation:
Plus strand

Genomic View for LOC105371680 Gene

Genes around LOC105371680 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371680 Gene

Proteins for LOC105371680 Gene

Post-translational modifications for LOC105371680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371680 Gene

Domains & Families for LOC105371680 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371680 Gene

Function for LOC105371680 Gene

Phenotypes From GWAS Catalog for LOC105371680 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371680 Gene

Localization for LOC105371680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371680 Gene

Pathways & Interactions for LOC105371680 Gene

PathCards logo

SuperPathways for LOC105371680 Gene

No Data Available

Interacting Proteins for LOC105371680 Gene

Gene Ontology (GO) - Biological Process for LOC105371680 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371680 Gene

Drugs & Compounds for LOC105371680 Gene

No Compound Related Data Available

Transcripts for LOC105371680 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371680 Gene

No ASD Table

Relevant External Links for LOC105371680 Gene

GeneLoc Exon Structure for
LOC105371680

No data available for mRNA/cDNA for LOC105371680 Gene

Expression for LOC105371680 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371680 Gene

Orthologs for LOC105371680 Gene

No data available for Orthologs and Evolution for LOC105371680 Gene

Paralogs for LOC105371680 Gene

No data available for Paralogs for LOC105371680 Gene

Variants for LOC105371680 Gene

Sequence variations from dbSNP and Humsavar for LOC105371680 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000025622 -- 199,456,458(+) GAG/GAGAG intron_variant
rs1000105677 -- 199,448,797(+) T/C upstream_transcript_variant
rs1000415243 -- 199,449,087(+) G/A intron_variant
rs1000476656 -- 199,450,661(+) AAAAAAA/AAAAAAAA intron_variant
rs1000508477 -- 199,451,726(+) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371680 Gene

Disorders for LOC105371680 Gene

No disorders were found for LOC105371680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371680 Gene

Publications for LOC105371680 Gene

No publications were found for LOC105371680 Gene.

No data available for External Links for LOC105371680 Gene

Products for LOC105371680 Gene

Sources for LOC105371680 Gene

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