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Aliases for LOC105371677 Gene

Subcategory (RNA class) for LOC105371677 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371677 Gene

  • Uncharacterized LOC105371677 3

External Ids for LOC105371677 Gene

Previous GeneCards Identifiers for LOC105371677 Gene

  • GC01U904373

Summaries for LOC105371677 Gene

GeneCards Summary for LOC105371677 Gene

LOC105371677 (Uncharacterized LOC105371677) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371677 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371677 Gene

Genomics for LOC105371677 Gene

GeneHancer (GH) Regulatory Elements for LOC105371677 Gene

Promoters and enhancers for LOC105371677 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J198518 Enhancer 1 FANTOM5 ENCODE 600.7 -1.3 -1265 5.9 SMARCA4 IKZF1 DPF2 REST GTF2E2 HDAC1 ZNF316 MGA ZNF766 RUNX3 LOC105371677 PTPRC ATP6V1G3
GH01J198534 Promoter/Enhancer 1.2 Ensembl ENCODE 0.4 -14.7 -14742 1.4 RERE SOX13 CEBPA GATAD2A RXRB FOXA2 TCF7 FOXA1 YY1 HHEX ATP6V1G3 LOC105371677
GH01J198495 Enhancer 0.9 Ensembl ENCODE 0.3 +21.1 21134 6.6 MAFK IKZF1 POLR2A NFE2L2 ZNF316 JUN NFE2 JUND FOS EP300 ATP6V1G3 LOC105371677 GC01P198298
GH01J198528 Enhancer 0.5 ENCODE 0.4 -8.4 -8357 0.1 CEBPB JUND EP300 STAT3 JUN MAFF LOC105371677 ATP6V1G3
GH01J198492 Enhancer 0.7 Ensembl ENCODE 0.3 +27.2 27228 2.4 POLR2A FOXA1 FOXA2 FOSL2 JUND ATP6V1G3 LOC105371677 GC01P198298
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371677 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371677 Gene

Genomic Locations for LOC105371677 Gene
chr1:198,452,364-198,520,229
(GRCh38/hg38)
Size:
67,866 bases
Orientation:
Minus strand

Genomic View for LOC105371677 Gene

Genes around LOC105371677 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371677 Gene

Proteins for LOC105371677 Gene

Post-translational modifications for LOC105371677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371677 Gene

Domains & Families for LOC105371677 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371677 Gene

Function for LOC105371677 Gene

Phenotypes From GWAS Catalog for LOC105371677 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371677 Gene

Localization for LOC105371677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371677 Gene

Pathways & Interactions for LOC105371677 Gene

PathCards logo

SuperPathways for LOC105371677 Gene

No Data Available

Interacting Proteins for LOC105371677 Gene

Gene Ontology (GO) - Biological Process for LOC105371677 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371677 Gene

Drugs & Compounds for LOC105371677 Gene

No Compound Related Data Available

Transcripts for LOC105371677 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371677 Gene

No ASD Table

Relevant External Links for LOC105371677 Gene

GeneLoc Exon Structure for
LOC105371677

No data available for mRNA/cDNA for LOC105371677 Gene

Expression for LOC105371677 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371677 Gene

Orthologs for LOC105371677 Gene

No data available for Orthologs and Evolution for LOC105371677 Gene

Paralogs for LOC105371677 Gene

No data available for Paralogs for LOC105371677 Gene

Variants for LOC105371677 Gene

Sequence variations from dbSNP and Humsavar for LOC105371677 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000070349 -- 198,451,995(-) T/G downstream_transcript_variant
rs1000078012 -- 198,495,457(-) G/T intron_variant
rs1000108610 -- 198,495,005(-) C/T intron_variant
rs1000205742 -- 198,485,818(-) C/T intron_variant
rs1000219440 -- 198,471,188(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371677 Gene

Disorders for LOC105371677 Gene

No disorders were found for LOC105371677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371677 Gene

Publications for LOC105371677 Gene

No publications were found for LOC105371677 Gene.

No data available for External Links for LOC105371677 Gene

Products for LOC105371677 Gene

Sources for LOC105371677 Gene

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