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Aliases for LOC105371654 Gene

Subcategory (RNA class) for LOC105371654 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371654 Gene

  • Uncharacterized LOC105371654 3

External Ids for LOC105371654 Gene

Previous GeneCards Identifiers for LOC105371654 Gene

  • GC01U904287

Summaries for LOC105371654 Gene

GeneCards Summary for LOC105371654 Gene

LOC105371654 (Uncharacterized LOC105371654) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371654 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371654 Gene

Genomics for LOC105371654 Gene

GeneHancer (GH) Regulatory Elements for LOC105371654 Gene

Promoters and enhancers for LOC105371654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J186221 Enhancer 0.4 FANTOM5 600.7 +0.6 632 0.2 NFE2 LOC105371654 PTGS2 ENSG00000224691
GH01J186212 Enhancer 1.1 Ensembl ENCODE 0.4 +9.7 9675 2.9 CC2D1A CTCF MLLT1 NFIB MCM2 RAD21 PKNOX1 ARID2 IKZF1 TARDBP TPR OCLM PACERR LOC105371654 ENSG00000224691
GH01J186195 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +21.1 21114 19.6 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 TRIM24 ZNF639 SMARCA4 MTA1 IKZF1 DPF2 ENSG00000224691 ODR4 TPR HMCN1 PLA2G4A LOC105371654
GH01J186186 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +34.6 34563 3.9 SMARCA4 FOSL2 POLR2A CEBPB JUN SP1 JUND RUNX3 FOS EP300 ENSG00000273198 ENSG00000224691 LOC105371654 HMCN1
GH01J186182 Enhancer 0.9 ENCODE dbSUPER 0.3 +39.4 39388 2.2 PRDM1 POLR2A IKZF2 PKNOX1 ZNF316 CEBPB CHD2 JUN SP1 NFE2 PRG4 ENSG00000224691 LOC105371654 HMCN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371654 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371654 Gene

Genomic Locations for LOC105371654 Gene
chr1:186,182,362-186,222,715
(GRCh38/hg38)
Size:
40,354 bases
Orientation:
Minus strand

Genomic View for LOC105371654 Gene

Genes around LOC105371654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371654 Gene

Proteins for LOC105371654 Gene

Post-translational modifications for LOC105371654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371654 Gene

Domains & Families for LOC105371654 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371654 Gene

Function for LOC105371654 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371654 Gene

Localization for LOC105371654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371654 Gene

Pathways & Interactions for LOC105371654 Gene

PathCards logo

SuperPathways for LOC105371654 Gene

No Data Available

Interacting Proteins for LOC105371654 Gene

Gene Ontology (GO) - Biological Process for LOC105371654 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371654 Gene

Drugs & Compounds for LOC105371654 Gene

No Compound Related Data Available

Transcripts for LOC105371654 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371654 Gene

No ASD Table

Relevant External Links for LOC105371654 Gene

GeneLoc Exon Structure for
LOC105371654

No data available for mRNA/cDNA for LOC105371654 Gene

Expression for LOC105371654 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371654 Gene

Orthologs for LOC105371654 Gene

No data available for Orthologs and Evolution for LOC105371654 Gene

Paralogs for LOC105371654 Gene

No data available for Paralogs for LOC105371654 Gene

Variants for LOC105371654 Gene

Sequence variations from dbSNP and Humsavar for LOC105371654 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1056456 likely-benign, Macular degeneration 186,190,552(-) C/T intron_variant
rs145533442 likely-benign, Macular degeneration 186,190,300(-) A/C intron_variant
rs145772673 uncertain-significance, Macular degeneration 186,189,743(-) G/A intron_variant
rs146867591 uncertain-significance, Macular degeneration 186,189,701(-) T/C intron_variant
rs146952459 likely-benign, Macular degeneration 186,190,709(-) TTTTTT/TTTTTTT intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371654 Gene

Disorders for LOC105371654 Gene

No disorders were found for LOC105371654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371654 Gene

Publications for LOC105371654 Gene

No publications were found for LOC105371654 Gene.

No data available for External Links for LOC105371654 Gene

Products for LOC105371654 Gene

Sources for LOC105371654 Gene

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