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Aliases for LOC105371642 Gene

Subcategory (RNA class) for LOC105371642 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371642 Gene

  • Uncharacterized LOC105371642 3

External Ids for LOC105371642 Gene

Previous GeneCards Identifiers for LOC105371642 Gene

  • GC01U905203

Summaries for LOC105371642 Gene

GeneCards Summary for LOC105371642 Gene

LOC105371642 (Uncharacterized LOC105371642) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371642 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371642 Gene

Genomics for LOC105371642 Gene

GeneHancer (GH) Regulatory Elements for LOC105371642 Gene

Promoters and enhancers for LOC105371642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182120 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +11.3 11287 2.9 ZNF652 ELF3 CEBPG RERE TFE3 ELF1 SP7 SP1 HNF1A PPARG ENSG00000228664 RNU6-152P ENSG00000224810 ENSG00000232309 LOC105371642
GH01J182113 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +5.7 5732 4.2 CBFA2T2 CEBPG ZNF644 RXRB SOX13 EP300 CTBP1 TGIF2 NR2F2 NFIL3 GLUL ENSG00000224810 LOC105371642 ENSG00000232309
GH01J182100 Enhancer 0.9 ENCODE dbSUPER 0.4 -8.3 -8342 2.3 SP1 MYC SP7 ZIC2 CTBP1 POLR2A SOX13 SCRT2 EZH2 PKNOX1 TEDDM1 RGSL1 ENSG00000228664 RNU6-152P GLUL ENSG00000225982 LOC105371642
GH01J182087 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.3 -21.8 -21821 2.1 ZFX HDAC1 RFX1 CTBP1 ESRRA GABPA GATA3 NRF1 FOS KLF1 ENSG00000225982 GLUL TEDDM1 RGSL1 NPL LOC105371642
GH01J182096 Enhancer 0.7 Ensembl ENCODE 0.4 -13.7 -13669 0.6 NCOA3 ZNF24 GATA3 FOXA1 ZNF648 GLUL ENSG00000228664 RNU6-152P ENSG00000225982 LOC105371642
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371642 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371642 Gene

Genomic Locations for LOC105371642 Gene
chr1:182,109,969-182,117,815
(GRCh38/hg38)
Size:
7,847 bases
Orientation:
Plus strand

Genomic View for LOC105371642 Gene

Genes around LOC105371642 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371642 Gene

Proteins for LOC105371642 Gene

Post-translational modifications for LOC105371642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371642 Gene

Domains & Families for LOC105371642 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371642 Gene

Function for LOC105371642 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371642 Gene

Localization for LOC105371642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371642 Gene

Pathways & Interactions for LOC105371642 Gene

PathCards logo

SuperPathways for LOC105371642 Gene

No Data Available

Interacting Proteins for LOC105371642 Gene

Gene Ontology (GO) - Biological Process for LOC105371642 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371642 Gene

Drugs & Compounds for LOC105371642 Gene

No Compound Related Data Available

Transcripts for LOC105371642 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371642 Gene

No ASD Table

Relevant External Links for LOC105371642 Gene

GeneLoc Exon Structure for
LOC105371642

No data available for mRNA/cDNA for LOC105371642 Gene

Expression for LOC105371642 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371642 Gene

Orthologs for LOC105371642 Gene

No data available for Orthologs and Evolution for LOC105371642 Gene

Paralogs for LOC105371642 Gene

No data available for Paralogs for LOC105371642 Gene

Variants for LOC105371642 Gene

Sequence variations from dbSNP and Humsavar for LOC105371642 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000196314 -- 182,111,257(+) T/C intron_variant
rs1000532294 -- 182,109,575(+) G/T upstream_transcript_variant
rs1000850145 -- 182,113,735(+) T/C intron_variant
rs1001100515 -- 182,116,391(+) C/G intron_variant
rs1001428793 -- 182,115,980(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371642 Gene

Disorders for LOC105371642 Gene

No disorders were found for LOC105371642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371642 Gene

Publications for LOC105371642 Gene

No publications were found for LOC105371642 Gene.

No data available for External Links for LOC105371642 Gene

Products for LOC105371642 Gene

Sources for LOC105371642 Gene

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