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Aliases for LOC105371573 Gene

Subcategory (RNA class) for LOC105371573 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371573 Gene

  • Uncharacterized LOC105371573 3

External Ids for LOC105371573 Gene

Previous GeneCards Identifiers for LOC105371573 Gene

  • GC17U902123

Summaries for LOC105371573 Gene

GeneCards Summary for LOC105371573 Gene

LOC105371573 (Uncharacterized LOC105371573) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371573 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371573 Gene

Genomics for LOC105371573 Gene

GeneHancer (GH) Regulatory Elements for LOC105371573 Gene

Promoters and enhancers for LOC105371573 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J019361 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.1 144 3.1 ZFX CC2D1A CTCF MNT ZNF148 NKRF MLLT1 CSDE1 ZSCAN21 MYC LOC105371573 B9D1 EPN2 ENSG00000262319 MFAP4 SLC47A1 MAPK7 FAM83G TVP23B ENSG00000252349
GH17J019368 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +7.4 7422 2.8 SP5 ZNF644 IKZF1 CEBPA GATAD2A IKZF2 RCOR2 EED RUNX3 SAP130 MIR1180 ENSG00000262292 ZNF286B MAPK7 FAM83G B9D1 LOC105371573
GH17J019345 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -15.7 -15706 3.5 MAFK SP7 SP1 SP5 EGR1 SMARCA4 FOSL2 POLR2A RXRA DPF2 ENSG00000262319 ENSG00000230197 RNF112 MIR1180 LOC105371573 B9D1
GH17J019365 Enhancer 0.6 ENCODE 0.7 +2.6 2563 0.2 PPARG ZNF644 RXRB ZNF205 SAP130 ZGPAT NFIA SMAD4 NR2F6 ERF MFAP4 LOC105371573 B9D1 MAPK7
GH17J019364 Enhancer 0.5 ENCODE 0.7 +2.2 2223 0.2 SAP130 POLR2A ZFHX2 RCOR1 ZGPAT EGR2 MFAP4 LOC105371573 B9D1 MAPK7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371573 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371573 Gene

Genomic Locations for LOC105371573 Gene
chr17:19,362,720-19,369,872
(GRCh38/hg38)
Size:
7,153 bases
Orientation:
Plus strand

Genomic View for LOC105371573 Gene

Genes around LOC105371573 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371573 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371573 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371573 Gene

Proteins for LOC105371573 Gene

Post-translational modifications for LOC105371573 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371573 Gene

Domains & Families for LOC105371573 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371573 Gene

Function for LOC105371573 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371573 Gene

Localization for LOC105371573 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371573 Gene

Pathways & Interactions for LOC105371573 Gene

PathCards logo

SuperPathways for LOC105371573 Gene

No Data Available

Interacting Proteins for LOC105371573 Gene

Gene Ontology (GO) - Biological Process for LOC105371573 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371573 Gene

Drugs & Compounds for LOC105371573 Gene

No Compound Related Data Available

Transcripts for LOC105371573 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371573 Gene

No ASD Table

Relevant External Links for LOC105371573 Gene

GeneLoc Exon Structure for
LOC105371573

No data available for mRNA/cDNA for LOC105371573 Gene

Expression for LOC105371573 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371573 Gene

Orthologs for LOC105371573 Gene

No data available for Orthologs and Evolution for LOC105371573 Gene

Paralogs for LOC105371573 Gene

No data available for Paralogs for LOC105371573 Gene

Variants for LOC105371573 Gene

Sequence variations from dbSNP and Humsavar for LOC105371573 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs117169107 likely-benign, benign, Meckel-Gruber syndrome, not specified 19,362,679(+) C/T upstream_transcript_variant
rs2296978 likely-benign, benign, Meckel-Gruber syndrome, not specified 19,362,639(+) C/T upstream_transcript_variant
rs529182605 uncertain-significance, Meckel-Gruber syndrome 19,362,648(+) G/C upstream_transcript_variant
rs751480715 likely-benign, not specified, Joubert syndrome, Meckel-Gruber syndrome 19,362,537(+) G/A/C upstream_transcript_variant
rs1000001515 -- 19,366,534(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371573 Gene

Disorders for LOC105371573 Gene

No disorders were found for LOC105371573 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371573 Gene

Publications for LOC105371573 Gene

No publications were found for LOC105371573 Gene.

No data available for External Links for LOC105371573 Gene

Products for LOC105371573 Gene

Sources for LOC105371573 Gene

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