Aliases for LOC105371566 Gene

Aliases for LOC105371566 Gene

  • Uncharacterized LOC105371566 3
  • Uncharacterized Protein LOC105371566 3

External Ids for LOC105371566 Gene

Previous GeneCards Identifiers for LOC105371566 Gene

  • GC17U902486

Summaries for LOC105371566 Gene

GeneCards Summary for LOC105371566 Gene

LOC105371566 (Uncharacterized LOC105371566) is a Protein Coding gene. Diseases associated with LOC105371566 include Deafness, Autosomal Recessive 3.

Additional gene information for LOC105371566 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371566 Gene

Genomics for LOC105371566 Gene

GeneHancer (GH) Regulatory Elements for LOC105371566 Gene

Promoters and enhancers for LOC105371566 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J018129 Enhancer 0.9 FANTOM5 ENCODE 0.4 -11.4 -11374 0.3 FOXA1 USF2 MNT SP1 ZNF548 CREB1 RXRA PRDM10 FOXA2 SP2 FOXO3B DRG2 SMCR8 ENSG00000262202 MYO15A TOM1L2 piR-56497-064 LOC105371566 lnc-TOP3A-1
GH17J018113 Enhancer 0.4 Ensembl 0.6 +3.9 3888 0.2 FOXA2 FOXP1 TEAD3 ENSG00000279428 LOC105371566 lnc-ATPAF2-2 MYO15A
GH17J018102 Enhancer 0.4 Ensembl ENCODE 0.4 +15.1 15088 0.6 REST LLGL1 DRG2 SREBF1 NONHSAG021039.2 lnc-ATPAF2-2 LOC105371566
GH17J018108 Enhancer 0.3 Ensembl 0.4 +9.5 9488 0.6 HIC1 GLIS1 MYO15A NONHSAG021039.2 SREBF1 DRG2 ENSG00000279428 LOC105371566 lnc-ATPAF2-2
GH17J018124 Enhancer 0.3 Ensembl 0.4 -6.4 -6412 0.8 MNT ENSG00000197815 LOC105371566 piR-56497-064 MYO15A lnc-TOP3A-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371566 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371566 Gene

Genomic Locations for LOC105371566 Gene
chr17:18,102,005-18,117,789
(GRCh38/hg38)
Size:
15,785 bases
Orientation:
Minus strand

Genomic View for LOC105371566 Gene

Genes around LOC105371566 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371566 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371566 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371566 Gene

Proteins for LOC105371566 Gene

Post-translational modifications for LOC105371566 Gene

No Post-translational modifications

Other Protein References for LOC105371566 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC105371566 Gene

Domains & Families for LOC105371566 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371566 Gene

Function for LOC105371566 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371566 Gene

Localization for LOC105371566 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371566 Gene

Pathways & Interactions for LOC105371566 Gene

PathCards logo

SuperPathways for LOC105371566 Gene

No Data Available

Interacting Proteins for LOC105371566 Gene

Gene Ontology (GO) - Biological Process for LOC105371566 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371566 Gene

Drugs & Compounds for LOC105371566 Gene

No Compound Related Data Available

Transcripts for LOC105371566 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371566 Gene

No ASD Table

Relevant External Links for LOC105371566 Gene

GeneLoc Exon Structure for
LOC105371566

No data available for mRNA/cDNA for LOC105371566 Gene

Expression for LOC105371566 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371566 Gene

Orthologs for LOC105371566 Gene

No data available for Orthologs and Evolution for LOC105371566 Gene

Paralogs for LOC105371566 Gene

No data available for Paralogs for LOC105371566 Gene

Variants for LOC105371566 Gene

Sequence variations from dbSNP and Humsavar for LOC105371566 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001523088 likely-pathogenic, Nonsyndromic hearing loss and deafness 18,148,889(-) G/A genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant
rs1057519603 likely-pathogenic, Deafness, autosomal recessive 3 18,126,856(-) T/C genic_downstream_transcript_variant, genic_upstream_transcript_variant
rs1057519604 pathogenic, Deafness, autosomal recessive 3 18,148,937(-) GGGG/GGG genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant
rs1057519605 uncertain-significance, Deafness, autosomal recessive 3 18,154,758(-) A/G upstream_transcript_variant
rs1060499798 pathogenic, Deafness, autosomal recessive 3 18,132,486(-) G/A genic_downstream_transcript_variant, genic_upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371566 Gene

Disorders for LOC105371566 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371566 Gene - From: GeneCards

Disorder Aliases PubMed IDs
deafness, autosomal recessive 3
  • dfnb3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371566: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371566 Gene

Publications for LOC105371566 Gene

No publications were found for LOC105371566 Gene.

No data available for External Links for LOC105371566 Gene

Products for LOC105371566 Gene

Sources for LOC105371566 Gene