Aliases for LOC105371566 Gene

Data sources for LOC105371566 Gene:

Subcategory (RNA class) for LOC105371566 Gene

lncRNA

Aliases for LOC105371566 Gene

External Ids for LOC105371566 Gene

Previous GeneCards Identifiers for LOC105371566 Gene

  • GC17U902486

Summaries for LOC105371566 Gene

GeneCards Summary for LOC105371566 Gene

LOC105371566 (Uncharacterized LOC105371566) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105371566 include Deafness, Autosomal Recessive 3.

Additional gene information for LOC105371566 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371566 Gene

Genomics for LOC105371566 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LOC105371566 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105371566 Gene

Latest Assembly
chr17:18,101,293-18,153,470
(GRCh38/hg38)
Size:
52,178 bases
Orientation:
Minus strand

Previous Assembly
chr17:18,011,005-18,020,875
(GRCh37/hg19 by Entrez Gene)
Size:
9,871 bases
Orientation:
Minus strand

Genomic View for LOC105371566 Gene

Genes around LOC105371566 on UCSC Golden Path with GeneCards custom track
LOC105371566 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105371566 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371566 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371566 Gene

Proteins for LOC105371566 Gene

Post-translational modifications for LOC105371566 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371566 Gene

Domains & Families for LOC105371566 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371566 Gene

Function for LOC105371566 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371566 Gene

Localization for LOC105371566 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371566 Gene

Pathways & Interactions for LOC105371566 Gene

PathCards logo

SuperPathways for LOC105371566 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371566 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105371566 Gene

Drugs & Compounds for LOC105371566 Gene

No Compound Related Data Available

Transcripts for LOC105371566 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105371566 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000194B0E3_9606 lncRNA 1392 1

RefSeq: NR_164159,

URS00008BD94A_9606 lncRNA 6395 2

LNCipedia: lnc-ATPAF2-2:1,

NONCODE: NONHSAT146147.2,

URS00008B77F8_9606 lncRNA 5182 2

LNCipedia: lnc-ATPAF2-2:5,

NONCODE: NONHSAT146144.2,

URS00008C0287_9606 lncRNA 4814 2

LNCipedia: lnc-ATPAF2-2:2,

NONCODE: NONHSAT146145.2,

URS00008BE3CF_9606 lncRNA 3600 2

LNCipedia: lnc-ATPAF2-2:4,

NONCODE: NONHSAT146146.2,

LOC105371566 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371566 Gene

No ASD Table

Relevant External Links for LOC105371566 Gene

GeneLoc Exon Structure for
LOC105371566

No data available for mRNA/cDNA for LOC105371566 Gene

Expression for LOC105371566 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371566 Gene

Orthologs for LOC105371566 Gene

No data available for Orthologs and Evolution for LOC105371566 Gene

Paralogs for LOC105371566 Gene

No data available for Paralogs for LOC105371566 Gene

Variants for LOC105371566 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105371566 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
892286 Uncertain Significance: Deafness, autosomal recessive 3 18,108,808(-) C/A
NM_016239.4(MYO15A):c.-236C>A
FIVE_PRIME_UTR
892287 Uncertain Significance: Deafness, autosomal recessive 3 18,108,820(-) C/T
NM_016239.4(MYO15A):c.-224C>T
FIVE_PRIME_UTR
892288 Uncertain Significance: Deafness, autosomal recessive 3 18,108,821(-) G/T
NM_016239.4(MYO15A):c.-223G>T
FIVE_PRIME_UTR
rs185186294 Uncertain Significance: Deafness, autosomal recessive 3 18,108,817(-) G/A
NM_016239.4(MYO15A):c.-227G>A
FIVE_PRIME_UTR
rs548842769 Uncertain Significance: Nonsyndromic Hearing Loss, Recessive 18,108,717(-) C/T
NM_016239.3(MYO15A):c.-327C>T

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105371566 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371566 Gene

Disorders for LOC105371566 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371566 Gene - From: GCD

Disorder Aliases PubMed IDs
deafness, autosomal recessive 3
  • dfnb3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371566: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371566 Gene

Publications for LOC105371566 Gene

No publications were found for LOC105371566 Gene.

No data available for Mastermind for LOC105371566 Gene

Products for LOC105371566 Gene

Sources for LOC105371566 Gene