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Aliases for LOC105371543 Gene

Subcategory (RNA class) for LOC105371543 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371543 Gene

  • Uncharacterized LOC105371543 3

External Ids for LOC105371543 Gene

Previous GeneCards Identifiers for LOC105371543 Gene

  • GC17U902277

Summaries for LOC105371543 Gene

GeneCards Summary for LOC105371543 Gene

LOC105371543 (Uncharacterized LOC105371543) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371543 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371543 Gene

Genomics for LOC105371543 Gene

GeneHancer (GH) Regulatory Elements for LOC105371543 Gene

Promoters and enhancers for LOC105371543 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J013385 Enhancer 0.9 FANTOM5 ENCODE 600.7 +1.6 1580 0.9 TRIM24 GABPA MGA ZNF766 SKIL CREM CEBPB BHLHE40 ZEB2 ZBTB40 LOC105371543 LINC02093
GH17J013387 Enhancer 0.2 Ensembl 600.7 -0.3 -334 0.4 LOC105371543 GC17P013414
GH17J013404 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -17.4 -17410 1.8 ELF3 CEBPG SP1 HNF1A PPARG ZNF644 SOX13 CEBPA GATAD2A RXRB GC17P013414 LOC105371543
GH17J013345 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +40.0 39965 3.8 CC2D1A TRIM24 SP7 FOSL2 ZBTB33 ATF1 ZNF639 PKNOX1 ZNF629 SP2 HS3ST3A1 LOC105371543 LINC02093
GH17J013393 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -8.0 -8027 2.6 FOS MEF2D NR2F1 EBF1 L3MBTL2 LOC105371543 GC17P013414
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371543 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371543 Gene

Genomic Locations for LOC105371543 Gene
chr17:13,353,148-13,387,067
(GRCh38/hg38)
Size:
33,920 bases
Orientation:
Minus strand

Genomic View for LOC105371543 Gene

Genes around LOC105371543 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371543 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371543 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371543 Gene

Proteins for LOC105371543 Gene

Post-translational modifications for LOC105371543 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371543 Gene

Domains & Families for LOC105371543 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371543 Gene

Function for LOC105371543 Gene

Phenotypes From GWAS Catalog for LOC105371543 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371543 Gene

Localization for LOC105371543 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371543 Gene

Pathways & Interactions for LOC105371543 Gene

PathCards logo

SuperPathways for LOC105371543 Gene

No Data Available

Interacting Proteins for LOC105371543 Gene

Gene Ontology (GO) - Biological Process for LOC105371543 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371543 Gene

Drugs & Compounds for LOC105371543 Gene

No Compound Related Data Available

Transcripts for LOC105371543 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371543 Gene

No ASD Table

Relevant External Links for LOC105371543 Gene

GeneLoc Exon Structure for
LOC105371543

No data available for mRNA/cDNA for LOC105371543 Gene

Expression for LOC105371543 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371543 Gene

Orthologs for LOC105371543 Gene

No data available for Orthologs and Evolution for LOC105371543 Gene

Paralogs for LOC105371543 Gene

No data available for Paralogs for LOC105371543 Gene

Variants for LOC105371543 Gene

Sequence variations from dbSNP and Humsavar for LOC105371543 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000041100 -- 13,378,303(-) C/G/T genic_downstream_transcript_variant, intron_variant
rs1000155544 -- 13,365,993(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000229674 -- 13,365,713(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000265413 -- 13,372,719(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000477819 -- 13,360,735(-) C/G genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371543 Gene

Disorders for LOC105371543 Gene

No disorders were found for LOC105371543 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371543 Gene

Publications for LOC105371543 Gene

No publications were found for LOC105371543 Gene.

No data available for External Links for LOC105371543 Gene

Products for LOC105371543 Gene

Sources for LOC105371543 Gene

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