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Aliases for LOC105371530 Gene

Subcategory (RNA class) for LOC105371530 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371530 Gene

  • Uncharacterized LOC105371530 3

External Ids for LOC105371530 Gene

Previous GeneCards Identifiers for LOC105371530 Gene

  • GC17U902255

Summaries for LOC105371530 Gene

GeneCards Summary for LOC105371530 Gene

LOC105371530 (Uncharacterized LOC105371530) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371530 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371530 Gene

Genomics for LOC105371530 Gene

GeneHancer (GH) Regulatory Elements for LOC105371530 Gene

Promoters and enhancers for LOC105371530 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J008768 Enhancer 0.3 Ensembl 600.7 -0.6 -620 0.6 CBX8 LOC105371530 CCDC42 RNF222 GC17P008796
GH17J008769 Enhancer 0.2 FANTOM5 600.7 -1.0 -1009 0.2 LOC105371530 CCDC42 RNF222 SPDYE4 ODF4 MFSD6L GC17P008796
GH17J008791 Enhancer 1 Ensembl ENCODE 0.3 -23.9 -23921 8 CEBPG RERE PPARG HMG20B PRDM12 CEBPA GATAD2A RXRB ZNF639 CTBP1 MFSD6L CTC1 PFAS CNTROB CCDC42 SPDYE4 ENSG00000265749 STX8 GC17P008796 LOC105371530
GH17J008785 Enhancer 0.7 ENCODE 0.4 -17.7 -17698 0.2 CTCF MZF1 RAD21 ZNF600 ZNF143 REST TRIM22 ZBTB48 IKZF1 SMC3 MFSD6L CCDC42 SPDYE4 GC17P008796 LOC105371530
GH17J008782 Enhancer 0.4 Ensembl ENCODE 0.4 -13.7 -13722 1.6 MFSD6L CCDC42 SPDYE4 RNF222 GC17P008796 LOC105371530
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371530 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371530 Gene

Genomic Locations for LOC105371530 Gene
chr17:8,765,869-8,768,280
(GRCh38/hg38)
Size:
2,412 bases
Orientation:
Minus strand

Genomic View for LOC105371530 Gene

Genes around LOC105371530 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371530 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371530 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371530 Gene

Proteins for LOC105371530 Gene

Post-translational modifications for LOC105371530 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371530 Gene

Domains & Families for LOC105371530 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371530 Gene

Function for LOC105371530 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371530 Gene

Localization for LOC105371530 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371530 Gene

Pathways & Interactions for LOC105371530 Gene

PathCards logo

SuperPathways for LOC105371530 Gene

No Data Available

Interacting Proteins for LOC105371530 Gene

Gene Ontology (GO) - Biological Process for LOC105371530 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371530 Gene

Drugs & Compounds for LOC105371530 Gene

No Compound Related Data Available

Transcripts for LOC105371530 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371530 Gene

No ASD Table

Relevant External Links for LOC105371530 Gene

GeneLoc Exon Structure for
LOC105371530

No data available for mRNA/cDNA for LOC105371530 Gene

Expression for LOC105371530 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371530 Gene

Orthologs for LOC105371530 Gene

No data available for Orthologs and Evolution for LOC105371530 Gene

Paralogs for LOC105371530 Gene

No data available for Paralogs for LOC105371530 Gene

Variants for LOC105371530 Gene

Sequence variations from dbSNP and Humsavar for LOC105371530 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000010897 -- 8,768,639(-) T/A upstream_transcript_variant
rs1001011172 -- 8,769,609(-) A/G upstream_transcript_variant
rs1001663510 -- 8,768,097(-) T/G intron_variant
rs1001941845 -- 8,766,103(-) G/A non_coding_transcript_variant
rs1002620501 -- 8,769,203(-) T/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371530 Gene

Disorders for LOC105371530 Gene

No disorders were found for LOC105371530 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371530 Gene

Publications for LOC105371530 Gene

No publications were found for LOC105371530 Gene.

No data available for External Links for LOC105371530 Gene

Products for LOC105371530 Gene

Sources for LOC105371530 Gene

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