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Aliases for LOC105371516 Gene

Subcategory (RNA class) for LOC105371516 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371516 Gene

  • Uncharacterized LOC105371516 3

External Ids for LOC105371516 Gene

Previous GeneCards Identifiers for LOC105371516 Gene

  • GC17U902291

Summaries for LOC105371516 Gene

GeneCards Summary for LOC105371516 Gene

LOC105371516 (Uncharacterized LOC105371516) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371516 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371516 Gene

Genomics for LOC105371516 Gene

GeneHancer (GH) Regulatory Elements for LOC105371516 Gene

Promoters and enhancers for LOC105371516 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J007833 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.4 -5390 13.8 HDGF MTA3 SP1 ZNF652 ZFX ELF3 CTCF MNT ZNF148 NKRF KDM6B CHD3 DVL2 PFAS CTC1 WRAP53 CNTROB POLR2A SNORD10 SNORA48
GH17J007825 Enhancer 1 FANTOM5 Ensembl dbSUPER 0.4 +8.8 8810 0.6 MAFK PRDM1 CTCF PKNOX1 CTBP1 NFE2 RAD21 MNT SMC3 SIN3A WRAP53 PER1 POLR2A CD68 LOC105371516 GC17M007788 DNAH2
GH17J007822 Enhancer 0.9 Ensembl ENCODE 0.4 +11.2 11211 0.6 CC2D1A CTCF RAD21 ARID2 ZNF143 REST TRIM22 PATZ1 ZNF24 ZBTB48 LOC105371516 GC17M007788 DNAH2
GH17J007808 Enhancer 0.8 Ensembl ENCODE 0.3 +23.8 23811 3 ZNF121 CEBPG ZNF384 CEBPA CEBPB JUND EP300 TCF7L2 POLR2A KDM6B TMEM88 CYB5D1 NAA38 GUCY2D EFNB3 WRAP53 CHD3 SCARNA21 ALOX15B
GH17J007804 Promoter 0.7 Ensembl 0.3 +30.0 30010 0.2 GABPA RFX5 POLR2A DNAH2 EFNB3 WRAP53 ATP1B2 TMEM88 CYB5D1 NAA38 ALOX15B TRAPPC1 KCNAB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371516 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371516 Gene

Genomic Locations for LOC105371516 Gene
chr17:7,832,891-7,834,111
(GRCh38/hg38)
Size:
1,221 bases
Orientation:
Minus strand

Genomic View for LOC105371516 Gene

Genes around LOC105371516 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371516 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371516 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371516 Gene

Proteins for LOC105371516 Gene

Post-translational modifications for LOC105371516 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371516 Gene

Domains & Families for LOC105371516 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371516 Gene

Function for LOC105371516 Gene

Phenotypes From GWAS Catalog for LOC105371516 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371516 Gene

Localization for LOC105371516 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371516 Gene

Pathways & Interactions for LOC105371516 Gene

PathCards logo

SuperPathways for LOC105371516 Gene

No Data Available

Interacting Proteins for LOC105371516 Gene

Gene Ontology (GO) - Biological Process for LOC105371516 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371516 Gene

Drugs & Compounds for LOC105371516 Gene

No Compound Related Data Available

Transcripts for LOC105371516 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371516 Gene

No ASD Table

Relevant External Links for LOC105371516 Gene

GeneLoc Exon Structure for
LOC105371516

No data available for mRNA/cDNA for LOC105371516 Gene

Expression for LOC105371516 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371516 Gene

Orthologs for LOC105371516 Gene

No data available for Orthologs and Evolution for LOC105371516 Gene

Paralogs for LOC105371516 Gene

No data available for Paralogs for LOC105371516 Gene

Variants for LOC105371516 Gene

Sequence variations from dbSNP and Humsavar for LOC105371516 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs116930996 likely-benign, not specified 7,832,924(-) C/A/G/T non_coding_transcript_variant
rs1000496288 -- 7,833,959(-) G/C intron_variant
rs1002680139 -- 7,835,404(-) G/A upstream_transcript_variant
rs1002759944 -- 7,832,744(-) C/T downstream_transcript_variant
rs1005118554 -- 7,834,104(-) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371516 Gene

Disorders for LOC105371516 Gene

No disorders were found for LOC105371516 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371516 Gene

Publications for LOC105371516 Gene

No publications were found for LOC105371516 Gene.

No data available for External Links for LOC105371516 Gene

Products for LOC105371516 Gene

Sources for LOC105371516 Gene

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