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Aliases for LOC105371501 Gene

Subcategory (RNA class) for LOC105371501 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371501 Gene

  • Uncharacterized LOC105371501 3

External Ids for LOC105371501 Gene

Previous GeneCards Identifiers for LOC105371501 Gene

  • GC17U902427

Summaries for LOC105371501 Gene

GeneCards Summary for LOC105371501 Gene

LOC105371501 (Uncharacterized LOC105371501) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371501 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371501 Gene

Genomics for LOC105371501 Gene

GeneHancer (GH) Regulatory Elements for LOC105371501 Gene

Promoters and enhancers for LOC105371501 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J005030 Enhancer 0.9 ENCODE 600.7 +0.8 801 1.9 CTCF ZNF148 ZNF121 ZNF687 RELA MLLT1 EGR1 RAD21 IKZF1 GLIS2 LOC105371501 LOC105371502 SPAG7 CHRNE CAMTA2 KIF1C GC17P005013
GH17J005035 Promoter 1.1 EPDnew Ensembl 0.7 +4.7 4694 1 E4F1 SLC52A1 CAMTA2 ZNF232 RPAIN ENSG00000263272 MYBBP1A DHX33 LOC105371501 LOC105371502 GC17P005013
GH17J005041 Promoter/Enhancer 1.2 EPDnew ENCODE 0.4 +11.7 11663 1.4 CBFA2T2 IKZF1 HDAC1 SOX6 TCF12 CTBP1 ZBTB11 GABPA FOSL1 NCOR1 ZFP3 SPAG7 ENO3 ENSG00000234203 INCA1 KIF1C CAMTA2 PFN1 SLC52A1 LOC105371502
GH17J005033 Promoter 0.5 Ensembl 0.7 +3.2 3195 0.4 SPAG7 LOC105371501 LOC105371502 SLC52A1 GC17P005013
GH17J005027 Enhancer 0.4 Ensembl 0.7 -2.7 -2705 0.6 PKNOX1 PAF1 GC17P005026 SPAG7 CHRNE LOC105371501 LOC105371502 GC17P005013 KIF1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371501 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371501 Gene

Genomic Locations for LOC105371501 Gene
chr17:5,030,806-5,053,374
(GRCh38/hg38)
Size:
22,569 bases
Orientation:
Plus strand

Genomic View for LOC105371501 Gene

Genes around LOC105371501 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371501 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371501 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371501 Gene

Proteins for LOC105371501 Gene

Post-translational modifications for LOC105371501 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371501 Gene

Domains & Families for LOC105371501 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371501 Gene

Function for LOC105371501 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371501 Gene

Localization for LOC105371501 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371501 Gene

Pathways & Interactions for LOC105371501 Gene

PathCards logo

SuperPathways for LOC105371501 Gene

No Data Available

Interacting Proteins for LOC105371501 Gene

Gene Ontology (GO) - Biological Process for LOC105371501 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371501 Gene

Drugs & Compounds for LOC105371501 Gene

No Compound Related Data Available

Transcripts for LOC105371501 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371501 Gene

No ASD Table

Relevant External Links for LOC105371501 Gene

GeneLoc Exon Structure for
LOC105371501

No data available for mRNA/cDNA for LOC105371501 Gene

Expression for LOC105371501 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371501 Gene

Orthologs for LOC105371501 Gene

No data available for Orthologs and Evolution for LOC105371501 Gene

Paralogs for LOC105371501 Gene

No data available for Paralogs for LOC105371501 Gene

Variants for LOC105371501 Gene

Sequence variations from dbSNP and Humsavar for LOC105371501 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs139373407 uncertain-significance, Vitamin B2 deficiency 5,033,861(+) C/T genic_downstream_transcript_variant, intron_variant
rs778417188 uncertain-significance, Vitamin B2 deficiency 5,033,561(+) G/A genic_downstream_transcript_variant, intron_variant
rs146289149 benign, not provided 5,034,118(+) G/A/T genic_downstream_transcript_variant, intron_variant
rs1000055838 -- 5,048,160(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000102935 -- 5,037,524(+) C/A/G/T genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371501 Gene

Disorders for LOC105371501 Gene

No disorders were found for LOC105371501 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371501 Gene

Publications for LOC105371501 Gene

No publications were found for LOC105371501 Gene.

No data available for External Links for LOC105371501 Gene

Products for LOC105371501 Gene

Sources for LOC105371501 Gene

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