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Aliases for LOC105371458 Gene

Subcategory (RNA class) for LOC105371458 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371458 Gene

  • Uncharacterized LOC105371458 3

External Ids for LOC105371458 Gene

Previous GeneCards Identifiers for LOC105371458 Gene

  • GC01U905240

Summaries for LOC105371458 Gene

GeneCards Summary for LOC105371458 Gene

LOC105371458 (Uncharacterized LOC105371458) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371458 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371458 Gene

Genomics for LOC105371458 Gene

GeneHancer (GH) Regulatory Elements for LOC105371458 Gene

Promoters and enhancers for LOC105371458 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J157948 Enhancer 0.6 Ensembl 600.7 +0.4 403 1 CC2D1A CTCF ZSCAN21 ZNF680 RAD21 PRDM10 REST SMC3 ZNF654 ZNF143 LOC105371458 CD5L KIRREL1 FCRL1 ENSG00000236957 LOC105371459
GH01J157962 Enhancer 0.9 Ensembl ENCODE 0.4 +14.1 14103 1.6 ZSCAN21 SP7 PRDM1 IKZF1 ZEB2 ZNF629 ZNF692 KLF9 CEBPB JUN KIRREL1 LOC105371458 LOC105371459
GH01J157967 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +20.9 20881 2.8 CTCF MAFK ZNF221 ZBTB17 RAD21 POLR2A SMC3 ZNF654 JUND JUN KIRREL1 LOC105371459 LOC105371458
GH01J157964 Enhancer 0.7 Ensembl ENCODE 0.4 +17.6 17601 3.2 SP1 HNF1A JUND FOSL2 HNF4A RXRA MAX KIRREL1 LOC105371459 LOC105371458
GH01J157963 Enhancer 0.7 ENCODE 0.4 +15.3 15330 0.2 CC2D1A CTCF ZSCAN21 RAD21 REST ZNF639 TRIM22 SCRT2 ZEB1 RUNX3 ENSG00000237842 KIRREL1 CD1E LOC105371458 LOC105371459
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371458 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371458 Gene

Genomic Locations for LOC105371458 Gene
chr1:157,948,476-157,950,921
(GRCh38/hg38)
Size:
2,446 bases
Orientation:
Plus strand

Genomic View for LOC105371458 Gene

Genes around LOC105371458 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371458 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371458 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371458 Gene

Proteins for LOC105371458 Gene

Post-translational modifications for LOC105371458 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371458 Gene

Domains & Families for LOC105371458 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371458 Gene

Function for LOC105371458 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371458 Gene

Localization for LOC105371458 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371458 Gene

Pathways & Interactions for LOC105371458 Gene

PathCards logo

SuperPathways for LOC105371458 Gene

No Data Available

Interacting Proteins for LOC105371458 Gene

Gene Ontology (GO) - Biological Process for LOC105371458 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371458 Gene

Drugs & Compounds for LOC105371458 Gene

No Compound Related Data Available

Transcripts for LOC105371458 Gene

mRNA/cDNA for LOC105371458 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371458 Gene

No ASD Table

Relevant External Links for LOC105371458 Gene

GeneLoc Exon Structure for
LOC105371458

Expression for LOC105371458 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371458 Gene

Orthologs for LOC105371458 Gene

No data available for Orthologs and Evolution for LOC105371458 Gene

Paralogs for LOC105371458 Gene

No data available for Paralogs for LOC105371458 Gene

Variants for LOC105371458 Gene

Sequence variations from dbSNP and Humsavar for LOC105371458 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000037751 -- 157,940,083(+) T/G intron_variant
rs1000132159 -- 157,929,081(+) G/T intron_variant
rs1000630519 -- 157,935,617(+) T/C intron_variant
rs1000828811 -- 157,947,049(+) C/T intron_variant
rs1000953367 -- 157,941,009(+) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371458 Gene

Disorders for LOC105371458 Gene

No disorders were found for LOC105371458 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371458 Gene

Publications for LOC105371458 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC105371458 Gene

Products for LOC105371458 Gene

Sources for LOC105371458 Gene

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