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Aliases for LOC105371449 Gene

Subcategory (RNA class) for LOC105371449 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371449 Gene

  • Uncharacterized LOC105371449 3

External Ids for LOC105371449 Gene

Previous GeneCards Identifiers for LOC105371449 Gene

  • GC01U904647

Summaries for LOC105371449 Gene

GeneCards Summary for LOC105371449 Gene

LOC105371449 (Uncharacterized LOC105371449) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105371449 include Porokeratosis.

Additional gene information for LOC105371449 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371449 Gene

Genomics for LOC105371449 Gene

GeneHancer (GH) Regulatory Elements for LOC105371449 Gene

Promoters and enhancers for LOC105371449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J154931 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -7.9 -7920 2.6 ELF3 SP1 SP5 KAT8 RXRA GATAD2A RXRB GABPA RCOR1 POLR2A SHC1 RUSC1-AS1 LOC105371449 PMVK
GH01J154925 Enhancer 0.5 Ensembl 0.7 -2.1 -2118 1.8 PKNOX1 ZNF316 SCRT2 ZBTB33 ZNF24 CBFA2T3 SHC1 LOC105371449 PMVK
GH01J154877 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +46.5 46511 1.1 ELF3 SP1 PPARG HMG20B RXRA GATAD2A RXRB CTCF FOXA2 NR2C1 PYGO2 ADAR CHRNB2 UBE2Q1 UBE2Q1-AS1 ADAM15 DCST1-AS1 KCNN3 LOC105371449
GH01J154878 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +45.6 45597 0.7 HDGF CC2D1A CTCF SP7 RAD21 GLIS2 ARID2 ZNF600 ZNF143 REST PYGO2 ADAR UBE2Q1 CHRNB2 UBE2Q1-AS1 ADAM15 DCST1-AS1 KCNN3 LOC105371449
GH01J154883 Enhancer 1.1 Ensembl ENCODE 0.3 +39.5 39529 2.1 CBFA2T2 TRIM24 MZF1 ZNF639 SMARCA4 ARID2 DPF2 IKZF1 ZNF512 REST KCNN3 LOC105371449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371449 Gene

Genomic Locations for LOC105371449 Gene
chr1:154,919,506-154,924,183
(GRCh38/hg38)
Size:
4,678 bases
Orientation:
Minus strand

Genomic View for LOC105371449 Gene

Genes around LOC105371449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371449 Gene

Proteins for LOC105371449 Gene

Post-translational modifications for LOC105371449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371449 Gene

Domains & Families for LOC105371449 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371449 Gene

Function for LOC105371449 Gene

Phenotypes From GWAS Catalog for LOC105371449 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371449 Gene

Localization for LOC105371449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371449 Gene

Pathways & Interactions for LOC105371449 Gene

PathCards logo

SuperPathways for LOC105371449 Gene

No Data Available

Interacting Proteins for LOC105371449 Gene

Gene Ontology (GO) - Biological Process for LOC105371449 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371449 Gene

Drugs & Compounds for LOC105371449 Gene

No Compound Related Data Available

Transcripts for LOC105371449 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371449 Gene

No ASD Table

Relevant External Links for LOC105371449 Gene

GeneLoc Exon Structure for
LOC105371449

No data available for mRNA/cDNA for LOC105371449 Gene

Expression for LOC105371449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371449 Gene

Orthologs for LOC105371449 Gene

No data available for Orthologs and Evolution for LOC105371449 Gene

Paralogs for LOC105371449 Gene

No data available for Paralogs for LOC105371449 Gene

Variants for LOC105371449 Gene

Sequence variations from dbSNP and Humsavar for LOC105371449 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs879255607 pathogenic, Porokeratosis of Mibelli 154,925,158(-) GG/G upstream_transcript_variant
rs1000078289 -- 154,907,163(-) A/G downstream_transcript_variant
rs1000159538 -- 154,920,607(-) C/G/T genic_downstream_transcript_variant, intron_variant
rs1000298457 -- 154,910,175(-) C/T genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000394348 -- 154,910,534(-) T/G genic_downstream_transcript_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371449 Gene

Disorders for LOC105371449 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105371449 Gene - From: GeneCards

Disorder Aliases PubMed IDs
porokeratosis
  • porokeratosis of mibelli
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105371449: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371449 Gene

Publications for LOC105371449 Gene

No publications were found for LOC105371449 Gene.

No data available for External Links for LOC105371449 Gene

Products for LOC105371449 Gene

Sources for LOC105371449 Gene

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