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Aliases for LOC105371442 Gene

Subcategory (RNA class) for LOC105371442 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371442 Gene

  • Uncharacterized LOC105371442 3

External Ids for LOC105371442 Gene

Previous GeneCards Identifiers for LOC105371442 Gene

  • GC01U905050

Summaries for LOC105371442 Gene

GeneCards Summary for LOC105371442 Gene

LOC105371442 (Uncharacterized LOC105371442) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371442 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371442 Gene

Genomics for LOC105371442 Gene

GeneHancer (GH) Regulatory Elements for LOC105371442 Gene

Promoters and enhancers for LOC105371442 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J152027 Enhancer 0.5 Ensembl dbSUPER 600.7 +0.6 617 0.2 PRDM10 LOC105371442 S100A11 THEM4 RPTN TDRKH C2CD4D-AS1 PIR45655 ENSG00000229021
GH01J152026 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.4 1417 0.6 LOC105371442 S100A11 THEM4 RPTN PIR45655 ENSG00000229021
GH01J152032 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.5 -8486 6.4 MTA3 ELF3 ZFX MLLT1 CEBPG GTF2F1 ZSCAN21 CTCF BACH1 MAFK S100A11 GABPB2 MRPL9 PI4KB PIP5K1A ENSG00000223861 THEM4 ZNF687 POGZ PSMB4
GH01J152028 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.2 -2183 2.6 MLLT1 CEBPG ZSCAN21 TRIM24 MZF1 CEBPA ATF7 PATZ1 ZNF692 ZNF24 PIP5K1A S100A10 ENSG00000229021 THEM4 C1orf56 S100A11 LOC105371442
GH01J152022 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 +3.6 3602 3.4 GATA3 PIR45655 ENSG00000229021 S100A11 THEM4 RPTN HRNR LINGO4 C2CD4D-AS1 LOC105371442 NBPF18P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371442 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371442 Gene

Genomic Locations for LOC105371442 Gene
chr1:152,018,878-152,027,518
(GRCh38/hg38)
Size:
8,641 bases
Orientation:
Minus strand

Genomic View for LOC105371442 Gene

Genes around LOC105371442 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371442 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371442 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371442 Gene

Proteins for LOC105371442 Gene

Post-translational modifications for LOC105371442 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371442 Gene

Domains & Families for LOC105371442 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371442 Gene

Function for LOC105371442 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371442 Gene

Localization for LOC105371442 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371442 Gene

Pathways & Interactions for LOC105371442 Gene

PathCards logo

SuperPathways for LOC105371442 Gene

No Data Available

Interacting Proteins for LOC105371442 Gene

Gene Ontology (GO) - Biological Process for LOC105371442 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371442 Gene

Drugs & Compounds for LOC105371442 Gene

No Compound Related Data Available

Transcripts for LOC105371442 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371442 Gene

No ASD Table

Relevant External Links for LOC105371442 Gene

GeneLoc Exon Structure for
LOC105371442

No data available for mRNA/cDNA for LOC105371442 Gene

Expression for LOC105371442 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371442 Gene

Orthologs for LOC105371442 Gene

No data available for Orthologs and Evolution for LOC105371442 Gene

Paralogs for LOC105371442 Gene

No data available for Paralogs for LOC105371442 Gene

Variants for LOC105371442 Gene

Sequence variations from dbSNP and Humsavar for LOC105371442 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000104294 -- 152,028,191(-) G/T upstream_transcript_variant
rs1000143695 -- 152,015,823(-) C/T intron_variant
rs1000211155 -- 152,023,243(-) T/A intron_variant
rs1000269446 -- 152,013,026(-) A/G intron_variant
rs1000306041 -- 152,023,061(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371442 Gene

Disorders for LOC105371442 Gene

No disorders were found for LOC105371442 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371442 Gene

Publications for LOC105371442 Gene

No publications were found for LOC105371442 Gene.

No data available for External Links for LOC105371442 Gene

Products for LOC105371442 Gene

Sources for LOC105371442 Gene

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