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Aliases for LOC105371427 Gene

Subcategory (RNA class) for LOC105371427 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371427 Gene

  • Uncharacterized LOC105371427 3

External Ids for LOC105371427 Gene

Previous GeneCards Identifiers for LOC105371427 Gene

  • GC01U904688

Summaries for LOC105371427 Gene

GeneCards Summary for LOC105371427 Gene

LOC105371427 (Uncharacterized LOC105371427) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371427 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371427 Gene

Genomics for LOC105371427 Gene

GeneHancer (GH) Regulatory Elements for LOC105371427 Gene

Promoters and enhancers for LOC105371427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150065 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 +0.6 561 3.9 MTA3 SP1 ZNF652 CC2D1A ELF3 ZFX SIX5 ZNF148 NKRF CEBPG LOC105371427 VPS45 GC01M150063 ENSG00000285184 OTUD7B PRPF3 SETDB1 ARNT UBE2D3P3 SF3B4
GH01J150061 Enhancer 0.8 Ensembl ENCODE 0.4 +5.7 5712 1 MAFK PKNOX1 ZNF316 CEBPB TSHZ1 FOS ZNF184 CEBPG JUND HIST2H2AC OTUD7B MTMR11 PLEKHO1 HIST2H2BD HIST2H2AA3 SF3B4 HIST2H3C HIST2H2BE BOLA1
GH01J150051 Promoter 0.9 Ensembl 0.4 +16.5 16504 0.2 CC2D1A CTCF FOXA1 CEBPB ZNF687 NFATC3 HDGF ZNF2 RAD21 HIST2H2BE HIST2H2AC BOLA1 OTUD7B PLEKHO1 LOC441907 GC01M150050 ENSG00000285184 LOC105371427
GH01J150054 Promoter 0.8 Ensembl 0.4 +13.1 13104 0.6 KDM1A FOS POLR2A MYC MAX LOC441907 ENSG00000223945 PLEKHO1 RPRD2 VPS45 ENSG00000285184 LOC105371427
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371427 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371427 Gene

Genomic Locations for LOC105371427 Gene
chr1:150,048,513-150,067,605
(GRCh38/hg38)
Size:
19,093 bases
Orientation:
Minus strand

Genomic View for LOC105371427 Gene

Genes around LOC105371427 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371427 Gene

Proteins for LOC105371427 Gene

Post-translational modifications for LOC105371427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371427 Gene

Domains & Families for LOC105371427 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371427 Gene

Function for LOC105371427 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371427 Gene

Localization for LOC105371427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371427 Gene

Pathways & Interactions for LOC105371427 Gene

PathCards logo

SuperPathways for LOC105371427 Gene

No Data Available

Interacting Proteins for LOC105371427 Gene

Gene Ontology (GO) - Biological Process for LOC105371427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371427 Gene

Drugs & Compounds for LOC105371427 Gene

No Compound Related Data Available

Transcripts for LOC105371427 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371427 Gene

No ASD Table

Relevant External Links for LOC105371427 Gene

GeneLoc Exon Structure for
LOC105371427

No data available for mRNA/cDNA for LOC105371427 Gene

Expression for LOC105371427 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371427 Gene

Orthologs for LOC105371427 Gene

No data available for Orthologs and Evolution for LOC105371427 Gene

Paralogs for LOC105371427 Gene

No data available for Paralogs for LOC105371427 Gene

Variants for LOC105371427 Gene

Sequence variations from dbSNP and Humsavar for LOC105371427 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs148944527 benign, Severe congenital neutropenia 5, autosomal recessive 150,068,662(-) G/A upstream_transcript_variant
rs1000275667 -- 150,042,713(-) T/G genic_downstream_transcript_variant, intron_variant
rs1000351252 -- 150,028,975(-) G/T genic_downstream_transcript_variant, intron_variant
rs1000397961 -- 150,037,130(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000407984 -- 150,036,814(-) C/G genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371427 Gene

Disorders for LOC105371427 Gene

No disorders were found for LOC105371427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371427 Gene

Publications for LOC105371427 Gene

No publications were found for LOC105371427 Gene.

No data available for External Links for LOC105371427 Gene

Products for LOC105371427 Gene

Sources for LOC105371427 Gene

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