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Aliases for LOC105371425 Gene

Subcategory (RNA class) for LOC105371425 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371425 Gene

  • Uncharacterized LOC105371425 3

External Ids for LOC105371425 Gene

Previous GeneCards Identifiers for LOC105371425 Gene

  • GC17U902247

Summaries for LOC105371425 Gene

GeneCards Summary for LOC105371425 Gene

LOC105371425 (Uncharacterized LOC105371425) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371425 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371425 Gene

Genomics for LOC105371425 Gene

GeneHancer (GH) Regulatory Elements for LOC105371425 Gene

Promoters and enhancers for LOC105371425 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J000340 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.9 1932 0.4 LOC105371425 ENSG00000262294 GC17M000276 RPH3AL
GH17J000330 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.3 -3251 9.7 ZNF121 CEBPG RERE SP1 HNF1A PPARG KAT8 GLIS2 RXRA ZIC2 LOC100506388 GEMIN4 NXN TLCD3A MRM3 LOC105371425 GC17M000276 RPH3AL
GH17J000348 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.2 13198 6.8 SP1 CTCF ELF3 MNT POLR2A ZNF121 CEBPG ZSCAN21 AHR MAFK RPH3AL ENSG00000262294 GEMIN4 NXN TLCD3A LOC100506388 ENSG00000262558 LOC105371425 GC17M000276
GH17J000349 Enhancer 0.6 ENCODE dbSUPER 0.4 +9.4 9395 0.5 JUND RFXANK CTCF ENSG00000262294 LOC100506388 LOC105371425 GC17M000276 RPH3AL
GH17J000342 Enhancer 0.3 dbSUPER 0.7 +4.4 4390 0.7 RXRA LOC105371425 ENSG00000262294 GC17M000276 RPH3AL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371425 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371425 Gene

Genomic Locations for LOC105371425 Gene
chr17:338,869-341,409
(GRCh38/hg38)
Size:
2,541 bases
Orientation:
Plus strand

Genomic View for LOC105371425 Gene

Genes around LOC105371425 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371425 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371425 Gene

Proteins for LOC105371425 Gene

Post-translational modifications for LOC105371425 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371425 Gene

Domains & Families for LOC105371425 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371425 Gene

Function for LOC105371425 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371425 Gene

Localization for LOC105371425 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371425 Gene

Pathways & Interactions for LOC105371425 Gene

PathCards logo

SuperPathways for LOC105371425 Gene

No Data Available

Interacting Proteins for LOC105371425 Gene

Gene Ontology (GO) - Biological Process for LOC105371425 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371425 Gene

Drugs & Compounds for LOC105371425 Gene

No Compound Related Data Available

Transcripts for LOC105371425 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371425 Gene

No ASD Table

Relevant External Links for LOC105371425 Gene

GeneLoc Exon Structure for
LOC105371425

No data available for mRNA/cDNA for LOC105371425 Gene

Expression for LOC105371425 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371425 Gene

Orthologs for LOC105371425 Gene

No data available for Orthologs and Evolution for LOC105371425 Gene

Paralogs for LOC105371425 Gene

No data available for Paralogs for LOC105371425 Gene

Variants for LOC105371425 Gene

Sequence variations from dbSNP and Humsavar for LOC105371425 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000041530 -- 336,951(+) C/G upstream_transcript_variant
rs1000919050 -- 342,497(+) A/C/G downstream_transcript_variant
rs1001338707 -- 337,503(+) C/T upstream_transcript_variant
rs1001371699 -- 342,284(+) T/C downstream_transcript_variant
rs1001593321 -- 339,139(+) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371425 Gene

Disorders for LOC105371425 Gene

No disorders were found for LOC105371425 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371425 Gene

Publications for LOC105371425 Gene

No publications were found for LOC105371425 Gene.

No data available for External Links for LOC105371425 Gene

Products for LOC105371425 Gene

Sources for LOC105371425 Gene

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