Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105371393 Gene

Subcategory (RNA class) for LOC105371393 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371393 Gene

  • Uncharacterized LOC105371393 3

External Ids for LOC105371393 Gene

Previous GeneCards Identifiers for LOC105371393 Gene

  • GC16U902094

Summaries for LOC105371393 Gene

GeneCards Summary for LOC105371393 Gene

LOC105371393 (Uncharacterized LOC105371393) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371393 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371393 Gene

Genomics for LOC105371393 Gene

GeneHancer (GH) Regulatory Elements for LOC105371393 Gene

Promoters and enhancers for LOC105371393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J087052 Enhancer 0.8 ENCODE 0.7 +4.2 4220 0.9 CBFA2T2 ZNF148 TRIM24 SMARCA4 GMEB1 DPF2 IKZF1 ZNF740 LEF1 HDAC1 FOXC2 MTHFSD LOC105371393 ENSG00000260795
GH16J087046 Enhancer 0.7 Ensembl 0.4 +10.4 10389 1 SP1 SP7 ZBTB8A ZNF600 PRDM10 ZIC2 ZEB2 PATZ1 ZNF692 ZNF561 LINC02181 LOC105371393 ENSG00000260795
GH16J086950 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.1 +105.1 105069 3.6 MTA3 SIX5 ZNF148 MLLT1 NFIB IKZF1 KLF14 EGR1 HDGF CREB1 MTHFSD ZCCHC14 LOC101928659 BANP KLHDC4 LINC02181 FOXC2 FOXL1 ENSG00000260795 LOC105371393
GH16J086923 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.1 +128.2 128189 16.6 SP1 ZKSCAN8 CBFA2T2 MLLT1 ZNF121 NCOA3 IKZF1 MAFK SP7 TRIM24 MTHFSD ZCCHC14 LOC101928659 ENSG00000269901 KLHDC4 ENSG00000270020 FOXC2 ENSG00000260795 LOC105371393
GH16J087016 Enhancer 0.7 ENCODE 0.3 +40.2 40150 0.2 CTCF FOSL2 CREB1 PRDM10 ZNF629 JUN GABPA RCOR1 RFX1 JUND LOC105371393 ENSG00000260795
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371393 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371393 Gene

Genomic Locations for LOC105371393 Gene
chr16:86,846,427-87,057,690
(GRCh38/hg38)
Size:
211,264 bases
Orientation:
Minus strand

Genomic View for LOC105371393 Gene

Genes around LOC105371393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371393 Gene

Proteins for LOC105371393 Gene

Post-translational modifications for LOC105371393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371393 Gene

Domains & Families for LOC105371393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371393 Gene

Function for LOC105371393 Gene

Phenotypes From GWAS Catalog for LOC105371393 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371393 Gene

Localization for LOC105371393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371393 Gene

Pathways & Interactions for LOC105371393 Gene

PathCards logo

SuperPathways for LOC105371393 Gene

No Data Available

Interacting Proteins for LOC105371393 Gene

Gene Ontology (GO) - Biological Process for LOC105371393 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371393 Gene

Drugs & Compounds for LOC105371393 Gene

No Compound Related Data Available

Transcripts for LOC105371393 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371393 Gene

No ASD Table

Relevant External Links for LOC105371393 Gene

GeneLoc Exon Structure for
LOC105371393

No data available for mRNA/cDNA for LOC105371393 Gene

Expression for LOC105371393 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371393 Gene

Orthologs for LOC105371393 Gene

No data available for Orthologs and Evolution for LOC105371393 Gene

Paralogs for LOC105371393 Gene

No data available for Paralogs for LOC105371393 Gene

Variants for LOC105371393 Gene

Sequence variations from dbSNP and Humsavar for LOC105371393 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000002140 -- 86,921,781(-) A/C intron_variant
rs1000010314 -- 87,029,206(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000014585 -- 86,869,872(-) G/A/T intron_variant
rs1000022717 -- 86,884,785(-) T/C intron_variant
rs1000042583 -- 86,969,637(-) C/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371393 Gene

Disorders for LOC105371393 Gene

No disorders were found for LOC105371393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371393 Gene

Publications for LOC105371393 Gene

No publications were found for LOC105371393 Gene.

No data available for External Links for LOC105371393 Gene

Products for LOC105371393 Gene

Sources for LOC105371393 Gene

Content
Loading form....