LOC105371378 Gene (RNA Gene)

Uncharacterized LOC105371378

GC16P084780
GIFtS:
3

Aliases for LOC105371378 Gene

Subcategory (RNA class) for LOC105371378 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105371378 Gene

  • Uncharacterized LOC105371378 3

External Ids for LOC105371378 Gene

Previous GeneCards Identifiers for LOC105371378 Gene

  • GC16U902101

Summaries for LOC105371378 Gene

GeneCards Summary for LOC105371378 Gene

LOC105371378 (Uncharacterized LOC105371378) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105371378 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105371378 Gene

Genomics for LOC105371378 Gene

GeneHancer (GH) Regulatory Elements for LOC105371378 Gene

Promoters and enhancers for LOC105371378 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J084785 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +5.7 5671 2.4 MNT NFIB MYC ZNF384 GLIS2 ZIC2 POLR2A ZBTB8A PRDM10 CTBP1 lnc-USP10-1 CRISPLD2 USP10 KIAA0513 LOC105371378 HSALNG0113161
GH16J084774 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -5.9 -5907 3.2 MYC MAX ZNF121 NFRKB CEBPB FOS JUN CTCF USP10 CRISPLD2 KIAA0513 LOC105371378 piR-59316-021
GH16J084788 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +8.6 8636 1.7 ZBTB33 RCOR1 USP10 lnc-USP10-1 LOC105371378 HSALNG0113161
GH16J084794 Enhancer 0.7 ENCODE dbSUPER 0.4 +14.3 14271 2.1 ZNF121 SP1 CEBPG IKZF1 CEBPB FOS NR2F2 REST ZBTB33 ATF7 CRISPLD2 COTL1 HSALNG0113161 LOC105371378 lnc-USP10-1
GH16J084790 Enhancer 0.4 Ensembl dbSUPER 0.4 +10.8 10771 0.6 RXRA CRISPLD2 USP10 lnc-USP10-1 LOC105371378 HSALNG0113161
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105371378 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105371378 Gene

Genomic Locations for LOC105371378 Gene
chr16:84,780,930-84,795,698
(GRCh38/hg38)
Size:
14,769 bases
Orientation:
Plus strand

Genomic View for LOC105371378 Gene

Genes around LOC105371378 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371378 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105371378 Gene

Proteins for LOC105371378 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105371378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371378 Gene

Domains & Families for LOC105371378 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105371378 Gene

Function for LOC105371378 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371378 Gene

Localization for LOC105371378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105371378 Gene

Pathways & Interactions for LOC105371378 Gene

PathCards logo

SuperPathways for LOC105371378 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105371378 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371378 Gene

Drugs & Compounds for LOC105371378 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105371378 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371378 Gene

No ASD Table

Relevant External Links for LOC105371378 Gene

GeneLoc Exon Structure for
LOC105371378

No data available for mRNA/cDNA for LOC105371378 Gene

Expression for LOC105371378 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371378 Gene

Orthologs for LOC105371378 Gene

No data available for Orthologs and Evolution for LOC105371378 Gene

Paralogs for LOC105371378 Gene

No data available for Paralogs for LOC105371378 Gene

Variants for LOC105371378 Gene

Sequence variations from dbSNP and Humsavar for LOC105371378 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000013602 -- 84,791,750(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000238609 -- 84,785,745(+) C/A downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000264416 -- 84,796,273(+) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000307156 -- 84,787,777(+) G/C genic_downstream_transcript_variant, intron_variant
rs1000332816 -- 84,781,458(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105371378 Gene

Disorders for LOC105371378 Gene

No disorders were found for LOC105371378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105371378 Gene

Publications for LOC105371378 Gene

No publications were found for LOC105371378 Gene.

No data available for External Links for LOC105371378 Gene

Products for LOC105371378 Gene

Sources for LOC105371378 Gene